Mechanism of Tubulin Oligomers and Single-Ring Disassembly Catastrophe.
Journal
The journal of physical chemistry letters
ISSN: 1948-7185
Titre abrégé: J Phys Chem Lett
Pays: United States
ID NLM: 101526034
Informations de publication
Date de publication:
07 Jun 2022
07 Jun 2022
Historique:
entrez:
7
6
2022
pubmed:
8
6
2022
medline:
8
6
2022
Statut:
aheadofprint
Résumé
Cold tubulin dimers coexist with tubulin oligomers and single rings. These structures are involved in microtubule assembly; however, their dynamics are poorly understood. Using state-of-the-art solution synchrotron time-resolved small-angle X-ray scattering, we discovered a disassembly catastrophe (half-life of ∼0.1 s) of tubulin rings and oligomers upon dilution or addition of guanosine triphosphate. A slower disassembly (half-life of ∼38 s) was observed following an increase in temperature. Our analysis showed that the assembly and disassembly processes were consistent with an isodesmic mechanism, involving a sequence of reversible reactions in which dimers were rapidly added or removed one at a time, terminated by a 2 order-of-magnitude slower ring-closing/opening step. We revealed how assembly conditions varied the mass fraction of tubulin in each of the coexisting structures, the rate constants, and the standard Helmholtz free energies for closing a ring and for longitudinal dimer-dimer associations.
Identifiants
pubmed: 35671351
doi: 10.1021/acs.jpclett.2c00947
pmc: PMC9208022
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
5246-5252Références
Protein Expr Purif. 2003 Nov;32(1):83-8
pubmed: 14680943
Elife. 2020 Mar 10;9:
pubmed: 32151315
J Supramol Struct. 1974;2(2-4):451-65
pubmed: 4437181
J Chem Inf Model. 2016 Aug 22;56(8):1518-27
pubmed: 27410762
Nature. 1984 Nov 15-21;312(5991):237-42
pubmed: 6504138
Mol Biol Cell. 2015 Apr 1;26(7):1207-10
pubmed: 25823928
Biochemistry. 1978 May 16;17(10):1908-15
pubmed: 656371
Curr Biol. 2007 Oct 23;17(20):1765-70
pubmed: 17919908
J Mol Biol. 1983 Feb 15;164(1):89-135
pubmed: 6842593
PLoS One. 2008;3(11):e3821
pubmed: 19043587
Proc Natl Acad Sci U S A. 1974 Apr;71(4):1159-63
pubmed: 4524627
J Appl Crystallogr. 2015 Mar 12;48(Pt 2):431-443
pubmed: 25844078
J Mol Biol. 1994 Apr 29;238(2):214-25
pubmed: 8158650
J Cell Biol. 2018 Aug 6;217(8):2691-2708
pubmed: 29794031
J Cell Biol. 2014 Nov 10;207(3):323-34
pubmed: 25385183
Elife. 2018 Apr 13;7:
pubmed: 29652248
iScience. 2020 Aug 29;23(9):101511
pubmed: 32920486
Science. 2017 May 19;356(6339):753-756
pubmed: 28522535
ACS Nano. 2017 Oct 24;11(10):9814-9824
pubmed: 28956913
Eur J Biochem. 1979 Sep;99(3):613-22
pubmed: 227689
J Am Chem Soc. 2020 Apr 29;142(17):7868-7882
pubmed: 32233479
Biochemistry. 1987 Feb 24;26(4):1123-32
pubmed: 3567159
Biochemistry. 1975 Oct 21;14(21):4567-73
pubmed: 1182104
Biochemistry. 1981 Aug 4;20(16):4709-16
pubmed: 7295642
Nat Commun. 2019 Mar 11;10(1):1155
pubmed: 30858367
Biophys J. 1997 Jul;73(1):418-27
pubmed: 9199805
PLoS Comput Biol. 2015 Jun 01;11(6):e1004313
pubmed: 26030285
J Biol Chem. 2000 Nov 24;275(47):37038-47
pubmed: 10956651
J Appl Crystallogr. 2018 Oct 11;51(Pt 6):1511-1524
pubmed: 30546286
Biochemistry. 1975 Oct 21;14(21):4559-66
pubmed: 241382
Soft Matter. 2020 Mar 21;16(11):2803-2814
pubmed: 32104873
Curr Opin Struct Biol. 2003 Apr;13(2):256-61
pubmed: 12727521
Cell. 2014 May 22;157(5):1117-29
pubmed: 24855948
J Phys Chem B. 2017 Sep 14;121(36):8427-8436
pubmed: 28820593
Cell. 2015 Aug 13;162(4):849-59
pubmed: 26234155
Proc Natl Acad Sci U S A. 2008 Apr 8;105(14):5378-83
pubmed: 18388201
Acta Crystallogr D Biol Crystallogr. 2015 Jan 1;71(Pt 1):67-75
pubmed: 25615861
Biochemistry. 2018 Oct 30;57(43):6153-6165
pubmed: 30247898
ACS Chem Biol. 2021 Nov 19;16(11):2212-2227
pubmed: 34643366
ACS Nano. 2019 Jul 23;13(7):7610-7626
pubmed: 31173689
Biophys J. 1996 May;70(5):2408-20
pubmed: 9172767
J Biol Chem. 1987 Dec 25;262(36):17278-84
pubmed: 2826416
Biochemistry. 1976 Sep 21;15(19):4248-54
pubmed: 963034
J Appl Crystallogr. 2019 Feb 01;52(Pt 1):219-242
pubmed: 31057345
J Am Chem Soc. 2012 May 30;134(21):8823-30
pubmed: 22329660