Evaluation of functional MRI-based human brain parcellation: a review.
brain parcellation
evaluation
fMRI
functional neuroimaging
Journal
Journal of neurophysiology
ISSN: 1522-1598
Titre abrégé: J Neurophysiol
Pays: United States
ID NLM: 0375404
Informations de publication
Date de publication:
01 07 2022
01 07 2022
Historique:
pubmed:
9
6
2022
medline:
16
7
2022
entrez:
8
6
2022
Statut:
ppublish
Résumé
Brain parcellations play a crucial role in the analysis of brain imaging data sets, as they can significantly affect the outcome of the analysis. In recent years, several novel approaches for constructing MRI-based brain parcellations have been developed with promising results. In the absence of ground truth, several evaluation approaches have been used to evaluate currently available brain parcellations. In this article, we review and critique methods used for evaluating functional brain parcellations constructed using fMRI data sets. We also describe how some of these evaluation methods have been used to estimate the optimal parcellation granularity. We provide a critical discussion of the current approach to the problem of identifying the optimal brain parcellation that is suited for a given neuroimaging study. We argue that the criteria for an optimal brain parcellation must depend on the application the parcellation is intended for. We describe a teleological approach to the evaluation of brain parcellations, where brain parcellations are evaluated in different contexts and optimal brain parcellations for each context are identified separately. We conclude by discussing several directions for further research that would result in improved evaluation strategies.
Identifiants
pubmed: 35675446
doi: 10.1152/jn.00411.2021
pmc: PMC9291407
doi:
Types de publication
Journal Article
Review
Research Support, N.I.H., Extramural
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
197-217Subventions
Organisme : NIBIB NIH HHS
ID : P41 EB027061
Pays : United States
Organisme : NIH HHS
ID : S10 OD017974
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH060662
Pays : United States
Organisme : NIDA NIH HHS
ID : R01 DA038984
Pays : United States
Références
Neuroimage. 2010 Oct 1;52(4):1465-76
pubmed: 20553896
Hum Brain Mapp. 2005 Jan;24(1):59-68
pubmed: 15382248
Neuroimage. 2015 Aug 15;117:67-79
pubmed: 25987368
Neuroimage. 2017 Oct 1;159:170-184
pubmed: 28739119
PLoS One. 2013 Jul 29;8(7):e71061
pubmed: 23923052
IEEE Trans Pattern Anal Mach Intell. 1979 Feb;1(2):224-7
pubmed: 21868852
Nat Neurosci. 2017 Apr;20(4):513-515
pubmed: 28218917
Nat Neurosci. 2015 Dec;18(12):1853-60
pubmed: 26551545
Neuroimage. 2015 May 1;111:147-58
pubmed: 25700949
Neuroimage. 2004 Jul;22(3):1214-22
pubmed: 15219593
PLoS One. 2008 Apr 23;3(4):e2001
pubmed: 18431486
Med Image Comput Comput Assist Interv. 2017 Sep;10433:407-415
pubmed: 29075681
J Neurosci Methods. 2015 Jan 30;240:128-40
pubmed: 25450335
Neuroimage. 2014 Jun;93 Pt 2:165-75
pubmed: 23567887
Neuron. 2015 Aug 5;87(3):657-70
pubmed: 26212711
Cereb Cortex. 2017 Jan 1;27(1):386-399
pubmed: 26464473
Cereb Cortex. 2016 Oct;26(10):4004-14
pubmed: 26334050
Hum Brain Mapp. 2011 Jan;32(1):71-9
pubmed: 20336685
Neuroimage. 2008 May 15;41(1):45-57
pubmed: 18367410
Neuroimage. 2011 Jan 15;54(2):1262-79
pubmed: 20850551
Neuroimage. 2013 Oct 15;80:387-96
pubmed: 23707592
Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3979-84
pubmed: 22355129
Neuroimage. 2018 Apr 15;170:5-30
pubmed: 28412442
Neuroimage. 2014 Jun;93 Pt 2:276-91
pubmed: 23876247
Proc Natl Acad Sci U S A. 2020 Feb 18;117(7):3797-3807
pubmed: 32019892
Neuroimage. 2013 Oct 15;80:397-404
pubmed: 23558097
Front Aging Neurosci. 2017 Nov 21;9:385
pubmed: 29209203
Behav Res Methods. 2017 Feb;49(1):282-293
pubmed: 26721666
Eur J Neurosci. 2014 Apr;39(8):1332-42
pubmed: 24417550
Neuroimage. 2015 Feb 1;106:207-21
pubmed: 25462796
Cereb Cortex. 2017 Oct 1;27(10):4719-4732
pubmed: 27591147
PeerJ. 2015 Feb 19;3:e784
pubmed: 25737822
Cereb Cortex. 1991 Jan-Feb;1(1):1-47
pubmed: 1822724
Nat Rev Neurosci. 2018 Nov;19(11):672-686
pubmed: 30305712
Med Image Anal. 2016 Aug;32:32-45
pubmed: 27054276
Neuroimage. 2012 Jul 16;61(4):1129-42
pubmed: 22440648
Cereb Cortex. 2013 Mar;23(3):739-49
pubmed: 22437053
Neuroimage. 2021 Nov;243:118487
pubmed: 34419594
Neuropsychologia. 2019 Jan;122:51-61
pubmed: 30500662
J Neurosci Methods. 2014 May 15;228:86-99
pubmed: 24675050
J Neurosci. 2012 May 2;32(18):6240-50
pubmed: 22553030
Neuroimage. 2016 Jan 15;125:120-130
pubmed: 26499813
Nat Rev Neurosci. 2003 Jan;4(1):37-48
pubmed: 12511860
Am J Drug Alcohol Abuse. 2013 Nov;39(6):343-4
pubmed: 24200203
Hum Brain Mapp. 2018 Nov;39(11):4213-4227
pubmed: 29962049
Science. 2010 Sep 10;329(5997):1358-61
pubmed: 20829489
Hum Brain Mapp. 2020 Feb 15;41(3):697-709
pubmed: 31652017
Neuropsychologia. 2011 Jun;49(7):1771-8
pubmed: 21382385
Neuroimage. 2016 Jul 15;135:92-106
pubmed: 27129758
Nat Rev Neurosci. 2002 Aug;3(8):606-16
pubmed: 12154362
Nat Neurosci. 2016 Jan;19(1):165-71
pubmed: 26595653
Neuroimage Clin. 2015 Jun 30;8:660-6
pubmed: 26288751
PLoS One. 2012;7(7):e40370
pubmed: 22792291
Am J Drug Alcohol Abuse. 2013 Nov;39(6):341-2
pubmed: 24200202
Front Neurosci. 2014 Jul 01;8:167
pubmed: 25071425
Neuroimage. 2015 Apr 1;109:217-31
pubmed: 25598050
Neuroimage. 2020 Feb 1;206:116233
pubmed: 31574322
Inf Process Med Imaging. 2015;24:85-97
pubmed: 26221668
Neuroimage. 2017 Jul 1;154:128-149
pubmed: 27956209
J Neurosci. 2011 Aug 10;31(32):11597-616
pubmed: 21832190
Neuron. 2013 Feb 6;77(3):586-95
pubmed: 23395382
Front Syst Neurosci. 2010 Jun 17;4:22
pubmed: 20592949
Nat Rev Neurosci. 2009 Mar;10(3):186-98
pubmed: 19190637
Nat Neurosci. 2012 Mar 18;15(4):528-36
pubmed: 22426254
PLoS One. 2015 Mar 23;10(3):e0119089
pubmed: 25799236
Neuroimage. 2010 Apr 15;50(3):910-9
pubmed: 20079440
Exp Brain Res. 2015 Sep;233(9):2695-705
pubmed: 26070898
Neuroimage. 2010 Jul 1;51(3):1126-39
pubmed: 20226257
Neuroimage. 2006 Nov 1;33(2):599-608
pubmed: 16952467
Brain Struct Funct. 2017 Apr;222(3):1447-1468
pubmed: 27550015
Nat Commun. 2019 Dec 25;10(1):1220
pubmed: 30899012
Brain Connect. 2014 Sep;4(7):470-80
pubmed: 25112943
PLoS One. 2018 Oct 31;13(10):e0206351
pubmed: 30379950
Alzheimers Dement. 2014 Mar;10(2):143-151.e1
pubmed: 24418054
Neuroimage. 2018 Apr 15;170:321-331
pubmed: 28235566
Ann N Y Acad Sci. 2010 Mar;1191:133-55
pubmed: 20392279
Cereb Cortex. 2016 Sep;26(9):3851-65
pubmed: 26315689
J Neural Eng. 2011 Aug;8(4):046025
pubmed: 21712571
Front Neuroinform. 2018 Oct 30;12:71
pubmed: 30425631
Neuroimage. 2018 Apr 15;170:412-423
pubmed: 28188914
PLoS One. 2011 Feb 04;6(2):e14655
pubmed: 21326603
Neuroscience. 2013 Jan 3;228:243-58
pubmed: 23098800
Med Image Comput Comput Assist Interv. 2013;16(Pt 2):607-15
pubmed: 24579191
Neuroscience. 2017 May 4;349:174-184
pubmed: 28259799
Cereb Cortex. 2018 Sep 1;28(9):3095-3114
pubmed: 28981612
Neuroimage. 2013 Aug 1;76:313-24
pubmed: 23523803
Neuroimage. 2007 Jul 1;36(3):511-21
pubmed: 17499520
Neurosci Lett. 2007 May 7;417(3):297-302
pubmed: 17399900
Cereb Cortex. 2018 Dec 1;28(12):4403-4423
pubmed: 30307480
J Neurol Sci. 2011 Nov 15;310(1-2):64-9
pubmed: 21862438
Neuroimage. 2001 Dec;14(6):1370-86
pubmed: 11707093
Neuroimage. 2006 Feb 15;29(4):1231-43
pubmed: 16246590
Neuroscientist. 2011 Oct;17(5):575-91
pubmed: 21527724
Cereb Cortex. 2016 Jan;26(1):288-303
pubmed: 25316338
Nat Commun. 2015 Dec 09;6:8885
pubmed: 26648521
Sci Rep. 2019 Mar 25;9(1):5071
pubmed: 30911075
PLoS One. 2018 Nov 8;13(11):e0206583
pubmed: 30408072
Front Hum Neurosci. 2017 Aug 24;11:420
pubmed: 28883789
Hum Brain Mapp. 2015 Feb;36(2):756-67
pubmed: 25394864
Personal Neurosci. 2018 Jul 5;1:
pubmed: 30225394
Int J Comput Biol Drug Des. 2020;13(1):58-70
pubmed: 32095160
Front Hum Neurosci. 2018 May 04;12:166
pubmed: 29780309
Neuroimage. 2013 Dec;83:174-88
pubmed: 23791915
Hum Brain Mapp. 2009 Dec;30(12):3865-86
pubmed: 19507160
J Neurophysiol. 2013 Mar;109(5):1444-56
pubmed: 23197455
Hum Brain Mapp. 2012 Aug;33(8):1914-28
pubmed: 21769991
Neuroimage. 2016 Aug 1;136:68-83
pubmed: 27192437
Front Hum Neurosci. 2013 Nov 22;7:802
pubmed: 24319422
Nat Commun. 2018 Jul 18;9(1):2807
pubmed: 30022026
Neuroimage. 2015 Feb 1;106:55-71
pubmed: 25462801
Neuroimage. 2010 Apr 15;50(3):1027-35
pubmed: 20060479
Neuroimage. 2010 Apr 15;50(3):970-83
pubmed: 20035887
Lancet Neurol. 2006 Feb;5(2):158-70
pubmed: 16426992
Cereb Cortex. 2019 Jun 1;29(6):2533-2551
pubmed: 29878084
PLoS One. 2014 Sep 09;9(9):e106768
pubmed: 25203441
Front Neuroinform. 2017 May 29;11:35
pubmed: 28611620
Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):3131-6
pubmed: 22323591
Neural Comput. 2004 Jun;16(6):1299-323
pubmed: 15130251
J Magn Reson Imaging. 2003 Oct;18(4):427-33
pubmed: 14508779
Neuroimage. 2007 Oct 1;37(4):1061-5; discussion 1066-8
pubmed: 17870622
Eur J Neurosci. 2010 Aug;32(3):383-98
pubmed: 20662902
J Neurosci. 2011 Sep 7;31(36):12954-62
pubmed: 21900574
Neurosci Biobehav Rev. 2014 Sep;45:100-18
pubmed: 24875392
Nat Neurosci. 2015 Nov;18(11):1664-71
pubmed: 26457551
Cereb Cortex. 2017 Nov 1;27(11):5415-5429
pubmed: 28968754
Nat Protoc. 2017 Mar;12(3):506-518
pubmed: 28182017
Neurology. 2005 Feb 8;64(3):548-50
pubmed: 15699394
Schizophr Bull. 2011 May;37(3):640-50
pubmed: 19920062
Elife. 2018 Feb 16;7:
pubmed: 29451491
Bipolar Disord. 2012 Mar;14(2):175-84
pubmed: 22420593
Med Image Comput Comput Assist Interv. 2007;10(Pt 2):136-43
pubmed: 18044562
Hum Brain Mapp. 2008 Jul;29(7):828-38
pubmed: 18438867
Neuron. 2017 Aug 16;95(4):791-807.e7
pubmed: 28757305
Nat Rev Neurosci. 2010 Feb;11(2):139-45
pubmed: 20046193
Neuroimage. 2014 Mar;88:212-27
pubmed: 24185018
IEEE Trans Med Imaging. 2013 Sep;32(9):1576-86
pubmed: 23661312
J Affect Disord. 2015 Feb 1;172:8-17
pubmed: 25451389
Front Neurosci. 2018 Feb 02;12:15
pubmed: 29456485
Neuroimage. 2018 Apr 15;170:54-67
pubmed: 28882628
Inf Process Med Imaging. 2011;22:562-73
pubmed: 21761686
Hum Brain Mapp. 2016 Mar;37(3):954-67
pubmed: 26706823
Neuroimage. 2005 May 1;25(4):1325-35
pubmed: 15850749
Neuroimage. 2017 Feb 1;146:918-939
pubmed: 27640749
J Neurosci. 2012 Jul 25;32(30):10238-52
pubmed: 22836258
Magn Reson Imaging. 2016 Feb;34(2):209-18
pubmed: 26523655
Neuroimage. 2018 Apr 15;170:332-347
pubmed: 28219775
Cereb Cortex. 2014 Mar;24(3):663-76
pubmed: 23146964
Neuroinformatics. 2020 Apr;18(2):295-306
pubmed: 31802355
PLoS One. 2008 Mar 19;3(3):e1794
pubmed: 18350136
Cereb Cortex. 2016 Aug;26(8):3508-26
pubmed: 27230218
Neuroimage. 2013 Nov 15;82:403-15
pubmed: 23747961
Front Hum Neurosci. 2019 Feb 26;13:62
pubmed: 30863296
J Neurophysiol. 2011 Sep;106(3):1125-65
pubmed: 21653723
Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):1087-1092
pubmed: 29339474
Sci Data. 2014 Oct 14;1:140037
pubmed: 25977792
Schizophr Res. 2015 Oct;168(1-2):297-304
pubmed: 26189075
Neurosci Biobehav Rev. 2011 Apr;35(5):1110-24
pubmed: 21115039
J Alzheimers Dis. 2011;26 Suppl 3:61-75
pubmed: 21971451
Front Hum Neurosci. 2016 Dec 27;10:659
pubmed: 28082885
Proc IEEE Int Symp Biomed Imaging. 2018 Apr;2018:101-104
pubmed: 30079125