Accelerating GPCR Drug Discovery With Conformation-Stabilizing VHHs.

ConfoBody GPCR SBDD VHH active state biosensor conformation conformer

Journal

Frontiers in molecular biosciences
ISSN: 2296-889X
Titre abrégé: Front Mol Biosci
Pays: Switzerland
ID NLM: 101653173

Informations de publication

Date de publication:
2022
Historique:
received: 26 01 2022
accepted: 22 03 2022
entrez: 9 6 2022
pubmed: 10 6 2022
medline: 10 6 2022
Statut: epublish

Résumé

The human genome encodes 850 G protein-coupled receptors (GPCRs), half of which are considered potential drug targets. GPCRs transduce extracellular stimuli into a plethora of vital physiological processes. Consequently, GPCRs are an attractive drug target class. This is underlined by the fact that approximately 40% of marketed drugs modulate GPCRs. Intriguingly 60% of non-olfactory GPCRs have no drugs or candidates in clinical development, highlighting the continued potential of GPCRs as drug targets. The discovery of small molecules targeting these GPCRs by conventional high throughput screening (HTS) campaigns is challenging. Although the definition of success varies per company, the success rate of HTS for GPCRs is low compared to other target families (Fujioka and Omori, 2012; Dragovich et al., 2022). Beyond this, GPCR structure determination can be difficult, which often precludes the application of structure-based drug design approaches to arising HTS hits. GPCR structural studies entail the resource-demanding purification of native receptors, which can be challenging as they are inherently unstable when extracted from the lipid matrix. Moreover, GPCRs are flexible molecules that adopt distinct conformations, some of which need to be stabilized if they are to be structurally resolved. The complexity of targeting distinct therapeutically relevant GPCR conformations during the early discovery stages contributes to the high attrition rates for GPCR drug discovery programs. Multiple strategies have been explored in an attempt to stabilize GPCRs in distinct conformations to better understand their pharmacology. This review will focus on the use of camelid-derived immunoglobulin single variable domains (VHHs) that stabilize disease-relevant pharmacological states (termed ConfoBodies by the authors) of GPCRs, as well as GPCR:signal transducer complexes, to accelerate drug discovery. These VHHs are powerful tools for supporting in vitro screening, deconvolution of complex GPCR pharmacology, and structural biology purposes. In order to demonstrate the potential impact of ConfoBodies on translational research, examples are presented of their role in active state screening campaigns and structure-informed rational design to identify

Identifiants

pubmed: 35677880
doi: 10.3389/fmolb.2022.863099
pii: 863099
pmc: PMC9170359
doi:

Types de publication

Journal Article Review

Langues

eng

Pagination

863099

Informations de copyright

Copyright © 2022 Laeremans, Sands, Claes, De Blieck, De Cesco, Triest, Busch, Felix, Kumar, Jaakola and Menet.

Déclaration de conflit d'intérêts

TL, ZS, PC, ADB, SDC, ST, AB, DF, AK, V-PJ, and CM are employees or subscription right holders of Confo Therapeutics NV. “ConfoBody” and “ConfoBodies” are registered trademarks of Confo Therapeutics NV.

Références

Pharmacol Rev. 2005 Jun;57(2):279-88
pubmed: 15914470
Curr Opin Struct Biol. 2019 Aug;57:196-203
pubmed: 31207383
Nat Rev Drug Discov. 2012 Jun 29;11(7):519-25
pubmed: 22743979
Nat Chem Biol. 2009 Oct;5(10):734-42
pubmed: 19701185
PLoS One. 2019 Jan 16;14(1):e0208892
pubmed: 30650080
Nat Commun. 2020 Apr 29;11(1):2087
pubmed: 32350260
Nature. 2012 Jan 29;482(7384):237-40
pubmed: 22286059
Elife. 2018 Jun 22;7:
pubmed: 29932421
Nature. 2018 Sep;561(7724):492-497
pubmed: 30209400
Proc Natl Acad Sci U S A. 2006 Mar 21;103(12):4586-91
pubmed: 16537393
Nat Commun. 2021 Jun 3;12(1):3305
pubmed: 34083522
Science. 2021 May 21;372(6544):808-814
pubmed: 33858992
Sci Adv. 2020 Jan 15;6(3):eaax7379
pubmed: 31998837
Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20565-70
pubmed: 21059953
Nat Commun. 2020 Aug 17;11(1):4121
pubmed: 32807782
MAbs. 2020 Jan-Dec;12(1):1709322
pubmed: 31924119
Nature. 2008 Jul 10;454(7201):183-7
pubmed: 18563085
Nature. 2016 Jul 7;535(7610):182-6
pubmed: 27362234
Molecules. 2011 May 03;16(5):3675-700
pubmed: 21540796
Nat Chem Biol. 2020 Oct;16(10):1105-1110
pubmed: 32690941
Naunyn Schmiedebergs Arch Pharmacol. 2004 Aug;370(2):114-23
pubmed: 15322733
J Comput Aided Mol Des. 2019 Nov;33(11):973-981
pubmed: 31758355
J Biol Chem. 2013 Sep 27;288(39):27849-60
pubmed: 23935101
Nat Commun. 2021 Jul 16;12(1):4357
pubmed: 34272386
PLoS One. 2017 Apr 20;12(4):e0175642
pubmed: 28426733
Drug Discov Today. 2016 Apr;21(4):625-31
pubmed: 26821135
Nature. 2017 Jun 1;546(7656):118-123
pubmed: 28437792
Nature. 2007 Nov 15;450(7168):383-7
pubmed: 17952055
ACS Chem Biol. 2013 May 17;8(5):1018-26
pubmed: 23485065
Cell. 2019 Jul 25;178(3):748-761.e17
pubmed: 31280962
Nat Commun. 2019 Jun 14;10(1):2636
pubmed: 31201318
Drug Discov Today. 2012 Oct;17(19-20):1133-8
pubmed: 22732182
Trends Pharmacol Sci. 2014 May;35(5):247-55
pubmed: 24690241
Trends Endocrinol Metab. 2017 Mar;28(3):213-226
pubmed: 27889227
J Comput Chem. 2012 Feb 15;33(5):561-72
pubmed: 22170280
Elife. 2018 May 04;7:
pubmed: 29726815
Cell. 2019 Jan 24;176(3):479-490.e12
pubmed: 30639100
Nature. 2011 Jul 19;477(7366):549-55
pubmed: 21772288
Methods Cell Biol. 2021;166:161-177
pubmed: 34752331
Anal Bioanal Chem. 2020 Nov;412(29):8015-8022
pubmed: 32926202
Nature. 2015 Aug 20;524(7565):315-21
pubmed: 26245379
Nat Commun. 2017 Dec 6;8(1):1967
pubmed: 29213077
Biochem Pharmacol. 2018 Dec;158:402-412
pubmed: 30342024
Nature. 2013 Dec 5;504(7478):101-6
pubmed: 24256733
Nat Commun. 2021 Feb 5;12(1):815
pubmed: 33547286
Nat Chem. 2014 Jan;6(1):15-21
pubmed: 24345941
Nat Commun. 2018 Sep 13;9(1):3712
pubmed: 30213947
Nature. 2019 Jan;565(7740):516-520
pubmed: 30602789
Nat Struct Mol Biol. 2018 Mar;25(3):289-296
pubmed: 29434346
J Chem Inf Model. 2015 May 26;55(5):1045-61
pubmed: 25848966
Nat Struct Mol Biol. 2020 Mar;27(3):274-280
pubmed: 32157248
Cell. 2018 Jan 11;172(1-2):55-67.e15
pubmed: 29307491
Nat Rev Drug Discov. 2018 Apr;17(4):243-260
pubmed: 29302067
Nature. 2016 Jul 21;535(7612):448-52
pubmed: 27409812
Biochemistry. 2020 Feb 25;59(7):880-891
pubmed: 31999436
Commun Biol. 2020 Mar 26;3(1):146
pubmed: 32218528
J Med Chem. 2022 Feb 24;65(4):3606-3615
pubmed: 35138850
Sci Rep. 2019 Oct 2;9(1):14199
pubmed: 31578448
Curr Opin Struct Biol. 2020 Feb;60:117-123
pubmed: 32036243
Nature. 2011 Jan 13;469(7329):175-80
pubmed: 21228869
Nat Chem Biol. 2016 Sep;12(9):709-16
pubmed: 27398998
Trends Pharmacol Sci. 2017 Sep;38(9):837-847
pubmed: 28648526
Neuron. 2018 Jun 6;98(5):963-976.e5
pubmed: 29754753
Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):18684-9
pubmed: 22031696
Annu Rev Biochem. 2013;82:775-97
pubmed: 23495938
Nat Struct Mol Biol. 2019 Dec;26(12):1123-1131
pubmed: 31740855
Curr Opin Cell Biol. 2019 Apr;57:115-122
pubmed: 30849632
EMBO J. 1998 Jul 1;17(13):3512-20
pubmed: 9649422
Proc Natl Acad Sci U S A. 2016 Sep 20;113(38):E5675-84
pubmed: 27601651
Nature. 2017 Oct 26;550(7677):543-547
pubmed: 29045395
Mol Pharmacol. 2014 Mar;85(3):472-81
pubmed: 24319111
Proc Natl Acad Sci U S A. 2021 Aug 17;118(33):
pubmed: 34385321
Elife. 2018 May 24;7:
pubmed: 29792401
ChemMedChem. 2014 Feb;9(2):256-75
pubmed: 24353016
Proc Natl Acad Sci U S A. 2020 Nov 24;117(47):29959-29967
pubmed: 33177239
ACS Nano. 2015 Feb 24;9(2):1388-99
pubmed: 25603171
Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):2562-2567
pubmed: 28223524
Curr Opin Struct Biol. 2013 Aug;23(4):563-8
pubmed: 23664057
Elife. 2021 Sep 01;10:
pubmed: 34467854
Nature. 2009 May 21;459(7245):356-63
pubmed: 19458711
Nature. 2017 Jun 8;546(7657):248-253
pubmed: 28538729
Nature. 2019 Jul;571(7764):284-288
pubmed: 31263273
Nat Commun. 2020 Mar 2;11(1):1145
pubmed: 32123179
J Biol Chem. 2020 Nov 6;295(45):15307-15327
pubmed: 32868455
Nat Rev Drug Discov. 2017 Dec;16(12):829-842
pubmed: 29075003
Nature. 2013 Oct 24;502(7472):575-579
pubmed: 24056936
Science. 2015 Mar 6;347(6226):1113-7
pubmed: 25745166
Mol Pharmacol. 2019 Dec;96(6):851-861
pubmed: 31624135
ACS Pharmacol Transl Sci. 2018 Jul 26;1(1):12-20
pubmed: 32219201
Nat Chem Biol. 2021 Oct;17(10):1057-1064
pubmed: 34168368
J Biol Chem. 2004 Jan 9;279(2):1256-61
pubmed: 14527957
Nature. 2019 Feb;566(7742):79-84
pubmed: 30675062
J Immunol. 2016 Mar 15;196(6):2893-901
pubmed: 26864035
Nature. 2013 Mar 28;495(7442):534-8
pubmed: 23515162
Science. 2020 Mar 20;367(6484):1346-1352
pubmed: 32193322
Nature. 2008 Sep 25;455(7212):497-502
pubmed: 18818650
Nat Chem Biol. 2018 Nov;14(11):1059-1066
pubmed: 30327561
Nature. 2019 Oct;574(7779):581-585
pubmed: 31645725

Auteurs

Toon Laeremans (T)

Confo Therapeutics NV, Zwijnaarde, Belgium.

Zara A Sands (ZA)

Confo Therapeutics NV, Zwijnaarde, Belgium.

Pieter Claes (P)

Confo Therapeutics NV, Zwijnaarde, Belgium.

Ann De Blieck (A)

Confo Therapeutics NV, Zwijnaarde, Belgium.

Stephane De Cesco (S)

Confo Therapeutics NV, Zwijnaarde, Belgium.

Sarah Triest (S)

Confo Therapeutics NV, Zwijnaarde, Belgium.

Andreas Busch (A)

Confo Therapeutics NV, Zwijnaarde, Belgium.

David Felix (D)

Confo Therapeutics NV, Zwijnaarde, Belgium.

Abhinav Kumar (A)

Confo Therapeutics NV, Zwijnaarde, Belgium.

Veli-Pekka Jaakola (VP)

Confo Therapeutics NV, Zwijnaarde, Belgium.

Christel Menet (C)

Confo Therapeutics NV, Zwijnaarde, Belgium.

Classifications MeSH