A Reference Genome Assembly of the Bobcat, Lynx rufus.
CCGP
California Conservation Genomics Project
carnivores
comparative genomics
felidae
long-read assembly
Journal
The Journal of heredity
ISSN: 1465-7333
Titre abrégé: J Hered
Pays: United States
ID NLM: 0375373
Informations de publication
Date de publication:
30 11 2022
30 11 2022
Historique:
received:
14
03
2022
accepted:
10
06
2022
pubmed:
14
6
2022
medline:
2
12
2022
entrez:
13
6
2022
Statut:
ppublish
Résumé
The bobcat (Lynx rufus) is a medium-sized carnivore well adapted to various environments and an indicator species for landscape connectivity. It is one of the 4 species within the extant Lynx genus in the family Felidae. Because of its broad geographic distribution and central role in food webs, the bobcat is important for conservation. Here we present a high-quality de novo genome assembly of a male bobcat located in Mendocino County, CA, as part of the California Conservation Genomics Project (CCGP). The assembly was generated using the standard CCGP pipeline from a combination of Omni-C and HiFi technologies. The primary assembly comprises 76 scaffolds spanning 2.4 Gb, represented by a scaffold N50 of 142 Mb, a contig N50 of 66.2 Mb, and a BUSCO completeness score of 95.90%. The bobcat genome will be an important resource for the effective management and conservation of this species and comparative genomics exploration.
Identifiants
pubmed: 35696092
pii: 6607694
doi: 10.1093/jhered/esac031
pmc: PMC9709964
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, U.S. Gov't, Non-P.H.S.
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
615-623Subventions
Organisme : NIH HHS
ID : S10 OD010786
Pays : United States
Organisme : NIH HHS
ID : S10 OD018174
Pays : United States
Informations de copyright
© The American Genetic Association. 2022.
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