REFLACX, a dataset of reports and eye-tracking data for localization of abnormalities in chest x-rays.


Journal

Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192

Informations de publication

Date de publication:
18 06 2022
Historique:
received: 08 11 2021
accepted: 01 06 2022
entrez: 18 6 2022
pubmed: 19 6 2022
medline: 22 6 2022
Statut: epublish

Résumé

Deep learning has shown recent success in classifying anomalies in chest x-rays, but datasets are still small compared to natural image datasets. Supervision of abnormality localization has been shown to improve trained models, partially compensating for dataset sizes. However, explicitly labeling these anomalies requires an expert and is very time-consuming. We propose a potentially scalable method for collecting implicit localization data using an eye tracker to capture gaze locations and a microphone to capture a dictation of a report, imitating the setup of a reading room. The resulting REFLACX (Reports and Eye-Tracking Data for Localization of Abnormalities in Chest X-rays) dataset was labeled across five radiologists and contains 3,032 synchronized sets of eye-tracking data and timestamped report transcriptions for 2,616 chest x-rays from the MIMIC-CXR dataset. We also provide auxiliary annotations, including bounding boxes around lungs and heart and validation labels consisting of ellipses localizing abnormalities and image-level labels. Furthermore, a small subset of the data contains readings from all radiologists, allowing for the calculation of inter-rater scores.

Identifiants

pubmed: 35717401
doi: 10.1038/s41597-022-01441-z
pii: 10.1038/s41597-022-01441-z
pmc: PMC9206650
doi:

Types de publication

Dataset Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

350

Subventions

Organisme : NIBIB NIH HHS
ID : R21 EB028367
Pays : United States

Informations de copyright

© 2022. The Author(s).

Références

Behav Res Methods. 2013 Mar;45(1):251-66
pubmed: 22773434
Pattern Recognit. 2018 Dec;84:345-356
pubmed: 30679879
Circulation. 2000 Jun 13;101(23):E215-20
pubmed: 10851218
J Digit Imaging. 2019 Aug;32(4):597-604
pubmed: 31044392
Radiology. 2017 Aug;284(2):574-582
pubmed: 28436741
BMC Med Res Methodol. 2013 Apr 29;13:61
pubmed: 23627889
Med Image Anal. 2019 Jan;51:101-115
pubmed: 30399507
Radiol Artif Intell. 2020 Nov 11;3(1):e200047
pubmed: 33842890
Spat Vis. 1997;10(4):437-42
pubmed: 9176953
Sci Data. 2019 Dec 12;6(1):317
pubmed: 31831740
Radiology. 2008 Mar;246(3):697-722
pubmed: 18195376
Spat Vis. 1997;10(4):433-6
pubmed: 9176952
Radiol Artif Intell. 2019 Jan 30;1(1):e180041
pubmed: 33937785
AJR Am J Roentgenol. 2016 Jul;207(1):2-3
pubmed: 27065212
PeerJ. 2014 Jun 19;2:e453
pubmed: 25024921
Nature. 2020 Sep;585(7825):357-362
pubmed: 32939066
Eur J Radiol. 2001 Aug;39(2):111-6
pubmed: 11522420
BMJ. 2005 Aug 13;331(7513):379-82
pubmed: 16096305
Med Image Anal. 2020 Dec;66:101797
pubmed: 32877839
Phys Ther. 2005 Mar;85(3):257-68
pubmed: 15733050
Sci Data. 2021 Mar 25;8(1):92
pubmed: 33767191
Radiology. 2019 Jun;291(3):781-791
pubmed: 30990384
BMC Med Inform Decis Mak. 2016 Jul 05;16:77
pubmed: 27378371

Auteurs

Ricardo Bigolin Lanfredi (R)

Scientific Computing and Imaging Institute, University of Utah, 72 S Central Campus Drive, Room 3750, Salt Lake City, UT, 84112, USA. ricbl@sci.utah.edu.

Mingyuan Zhang (M)

Department of Population Health Sciences, University of Utah, 295 Chipeta Way, Williams Building, Room 1N410, Salt Lake City, UT, 84108, USA.

William F Auffermann (WF)

Department of Radiology and Imaging Sciences, University of Utah, 30 North 1900 East #1A071, Salt Lake City, UT, 84132, USA.

Jessica Chan (J)

Department of Radiology and Imaging Sciences, University of Utah, 30 North 1900 East #1A071, Salt Lake City, UT, 84132, USA.

Phuong-Anh T Duong (PT)

Department of Radiology and Imaging Sciences, University of Utah, 30 North 1900 East #1A071, Salt Lake City, UT, 84132, USA.

Vivek Srikumar (V)

School of Computing, University of Utah, Room 3190, 50 Central Campus Dr., Salt Lake City, UT, 84112, USA.

Trafton Drew (T)

Department of Psychology, University of Utah, 380 S 1530 E Beh S 502, Salt Lake City, UT, 84112, USA.

Joyce D Schroeder (JD)

Department of Radiology and Imaging Sciences, University of Utah, 30 North 1900 East #1A071, Salt Lake City, UT, 84132, USA.

Tolga Tasdizen (T)

Scientific Computing and Imaging Institute, University of Utah, 72 S Central Campus Drive, Room 3750, Salt Lake City, UT, 84112, USA.

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Classifications MeSH