Genome-Wide Association Mapping Reveals Novel Putative Gene Candidates Governing Reproductive Stage Heat Stress Tolerance in Rice.
GWAS
marker-trait association
quantitative trait nucleotides
reproductive stage heat stress tolerance
rice
Journal
Frontiers in genetics
ISSN: 1664-8021
Titre abrégé: Front Genet
Pays: Switzerland
ID NLM: 101560621
Informations de publication
Date de publication:
2022
2022
Historique:
received:
15
02
2022
accepted:
25
03
2022
entrez:
23
6
2022
pubmed:
24
6
2022
medline:
24
6
2022
Statut:
epublish
Résumé
Temperature rise predicted for the future will severely affect rice productivity because the crop is highly sensitive to heat stress at the reproductive stage. Breeding tolerant varieties is an economically viable option to combat heat stress, for which the knowledge of target genomic regions associated with the reproductive stage heat stress tolerance (RSHT) is essential. A set of 192 rice genotypes of diverse origins were evaluated under natural field conditions through staggered sowings for RSHT using two surrogate traits, spikelet fertility and grain yield, which showed significant reduction under heat stress. These genotypes were genotyped using a 50 k SNP array, and the association analysis identified 10 quantitative trait nucleotides (QTNs) for grain yield, of which one QTN (
Identifiants
pubmed: 35734422
doi: 10.3389/fgene.2022.876522
pii: 876522
pmc: PMC9208292
doi:
Types de publication
Journal Article
Langues
eng
Pagination
876522Informations de copyright
Copyright © 2022 Ravikiran, Gopala Krishnan, Abhijith, Bollinedi, Nagarajan, Vinod, Bhowmick, Pal, Ellur and Singh.
Déclaration de conflit d'intérêts
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Références
Nat Commun. 2011 Sep 13;2:467
pubmed: 21915109
Plant Biotechnol J. 2014 Jan;12(1):28-37
pubmed: 24034357
Sci Rep. 2020 Jun 19;10(1):9958
pubmed: 32561778
Nat Plants. 2020 May;6(5):570-580
pubmed: 32313138
Theor Appl Genet. 2015 Aug;128(8):1507-17
pubmed: 25957114
Nat Genet. 2015 Jul;47(7):827-33
pubmed: 25985140
Nucleic Acids Res. 1980 Oct 10;8(19):4321-5
pubmed: 7433111
J Adv Res. 2020 May 26;24:447-461
pubmed: 32577311
Front Genet. 2020 Sep 15;11:562937
pubmed: 33110421
Metabolomics. 2019 Mar 25;15(4):51
pubmed: 30911851
Ann Bot. 2010 Sep;106(3):515-20
pubmed: 20566680
PLoS Genet. 2016 Feb 05;12(2):e1005844
pubmed: 26848586
Bot Stud. 2019 Sep 23;60(1):23
pubmed: 31549254
Antioxidants (Basel). 2020 May 25;9(5):
pubmed: 32466087
Mol Genet Genomics. 2020 Sep;295(5):1211-1226
pubmed: 32506235
Front Plant Sci. 2017 Jan 20;8:16
pubmed: 28163713
Proc Natl Acad Sci U S A. 2004 Jul 6;101(27):9971-5
pubmed: 15226500
PLoS One. 2012;7(11):e49652
pubmed: 23155476
BMC Genet. 2015 Apr 22;16:41
pubmed: 25895682
Plant Physiol. 2005 Nov;139(3):1107-24
pubmed: 16286450
PLoS One. 2017 Feb 2;12(2):e0171254
pubmed: 28152098
Mol Biol Rep. 2012 May;39(5):5883-8
pubmed: 22201023
Int J Mol Sci. 2020 Mar 17;21(6):
pubmed: 32192061
Gigascience. 2019 Feb 1;8(2):
pubmed: 30535326
Sci Rep. 2019 Dec 20;9(1):19486
pubmed: 31862891
Genetics. 2005 Apr;169(4):2267-75
pubmed: 15716509
BMC Plant Biol. 2013 Oct 06;13:153
pubmed: 24093800
Rice (N Y). 2017 Aug 30;10(1):40
pubmed: 28856618
PLoS One. 2013 Aug 22;8(8):e72157
pubmed: 23991056
Nat Genet. 2012 Jun 17;44(7):825-30
pubmed: 22706313
Trends Cell Biol. 1992 May;2(5):127-9
pubmed: 14731966
Rice (N Y). 2019 Jul 15;12(1):47
pubmed: 31309315
Sci Rep. 2015 Jun 26;5:11600
pubmed: 26111882
Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):E8528-E8536
pubmed: 28923951
PeerJ. 2019 Aug 29;7:e7595
pubmed: 31528506
Plant Physiol. 2006 Apr;140(4):1374-83
pubmed: 16461387
Nat Commun. 2016 Feb 04;7:10532
pubmed: 26842267
Nat Commun. 2020 Oct 28;11(1):5441
pubmed: 33116138
Plant Cell. 2015 Jul;27(7):1857-74
pubmed: 26163573
Plant Mol Biol. 2014 Sep;86(1-2):125-37
pubmed: 25002225
BMC Genomics. 2019 Apr 29;20(1):326
pubmed: 31035917
PLoS One. 2020 Sep 22;15(9):e0239085
pubmed: 32960916
PLoS One. 2016 Aug 05;11(8):e0160027
pubmed: 27494320
Nat Genet. 2018 Feb;50(2):278-284
pubmed: 29335547
Front Genet. 2020 Apr 22;11:213
pubmed: 32391041
Bioinformatics. 2012 Sep 15;28(18):2397-9
pubmed: 22796960
Ann Bot. 2002 Jun;89(6):683-7
pubmed: 12102523
BMC Plant Biol. 2016 Nov 14;16(1):252
pubmed: 27842501
J Exp Bot. 2019 Oct 15;70(19):5115-5130
pubmed: 31145789
PLoS Genet. 2016 Feb 01;12(2):e1005767
pubmed: 26828793
J Exp Bot. 2013 Jul;64(10):2899-914
pubmed: 23698632
Plant Cell. 2010 Mar;22(3):811-31
pubmed: 20215589
Plant Cell Physiol. 2016 Jan;57(1):57-68
pubmed: 26561535
Plant Mol Biol. 2009 Oct;71(3):207-26
pubmed: 19609685
Annu Rev Plant Biol. 2019 Apr 29;70:639-665
pubmed: 31035826
Rice (N Y). 2019 Dec 30;12(1):101
pubmed: 31889226
Genomics Proteomics Bioinformatics. 2020 Aug;18(4):481-487
pubmed: 33346083
PLoS One. 2012;7(7):e40899
pubmed: 22815860
J Exp Bot. 2015 Mar;66(5):1227-36
pubmed: 25534925
Biochemistry. 2006 Dec 26;45(51):15168-78
pubmed: 17176038
Sci Adv. 2017 Aug 02;3(8):e1603322
pubmed: 28782036
J Exp Bot. 2020 Feb 19;71(4):1614-1627
pubmed: 31846000
Int J Mol Sci. 2020 Feb 10;21(3):
pubmed: 32050518
Front Plant Sci. 2022 Jan 28;12:772907
pubmed: 35154175
Plant Cell Physiol. 2009 Nov;50(11):1911-22
pubmed: 19808807
EMBO J. 1998 Dec 15;17(24):7151-60
pubmed: 9857172
Nat Genet. 2006 Feb;38(2):203-8
pubmed: 16380716
Plant Mol Biol. 2019 Apr;99(6):545-559
pubmed: 30730020