Whole-Blood Transcriptional Profiles Enable Early Prediction of the Presence of Coronary Atherosclerosis and High-Risk Plaque Features at Coronary CT Angiography.
RNA sequencing analysis
advanced plaque analysis
circulating transcriptome
coronary CT
Journal
Biomedicines
ISSN: 2227-9059
Titre abrégé: Biomedicines
Pays: Switzerland
ID NLM: 101691304
Informations de publication
Date de publication:
02 Jun 2022
02 Jun 2022
Historique:
received:
31
03
2022
revised:
17
05
2022
accepted:
31
05
2022
entrez:
24
6
2022
pubmed:
25
6
2022
medline:
25
6
2022
Statut:
epublish
Résumé
Existing tools to estimate cardiovascular (CV) risk have sub-optimal predictive capacities. In this setting, non-invasive imaging techniques and omics biomarkers could improve risk-prediction models for CV events. This study aimed to identify gene expression patterns in whole blood that could differentiate patients with severe coronary atherosclerosis from subjects with a complete absence of detectable coronary artery disease and to assess associations of gene expression patterns with plaque features in coronary CT angiography (CCTA). Patients undergoing CCTA for suspected coronary artery disease (CAD) were enrolled. Coronary stenosis was quantified and CCTA plaque features were assessed. The whole-blood transcriptome was analyzed with RNA sequencing. We detected highly significant differences in the circulating transcriptome between patients with high-degree coronary stenosis (≥70%) in the CCTA and subjects with an absence of coronary plaque. Notably, regression analysis revealed expression signatures associated with the Leaman score, the segment involved score, the segment stenosis score, and plaque volume with density <150 HU at CCTA. This pilot study shows that patients with significant coronary stenosis are characterized by whole-blood transcriptome profiles that may discriminate them from patients without CAD. Furthermore, our results suggest that whole-blood transcriptional profiles may predict plaque characteristics.
Identifiants
pubmed: 35740331
pii: biomedicines10061309
doi: 10.3390/biomedicines10061309
pmc: PMC9219643
pii:
doi:
Types de publication
Journal Article
Langues
eng
Subventions
Organisme : Fondazione Regionale per la Ricerca Biomedica (FRRB)
ID : CP2_14/2018
Organisme : Ministero della Salute
ID : RCR-2019 -23669118_001
Organisme : Ministero della Salute
ID : 5‰ 2015
Références
Bioinformatics. 2018 Apr 15;34(8):1416-1418
pubmed: 29236969
PLoS One. 2009 Sep 14;4(9):e7037
pubmed: 19750006
Front Cardiovasc Med. 2021 Sep 06;8:707529
pubmed: 34552965
Sci Rep. 2020 May 26;10(1):8731
pubmed: 32457432
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
Expert Rev Proteomics. 2008 Oct;5(5):679-91
pubmed: 18937558
Crit Rev Clin Lab Sci. 2017 Jan;54(1):49-58
pubmed: 28013562
J Cardiovasc Comput Tomogr. 2016 Jul-Aug;10(4):269-81
pubmed: 27318587
J Cardiovasc Comput Tomogr. 2017 Nov;11(6):455-461
pubmed: 28918858
ACS Omega. 2021 Sep 06;6(37):24016-24026
pubmed: 34568680
Bioinformatics. 2014 Apr 1;30(7):923-30
pubmed: 24227677
J Cardiovasc Comput Tomogr. 2013 Jul-Aug;7(4):256-66
pubmed: 24148779
Genomic Med. 2007;1(3-4):105-12
pubmed: 18923935
Circ Cardiovasc Genet. 2008 Oct;1(1):31-8
pubmed: 20031539
Nat Methods. 2015 May;12(5):453-7
pubmed: 25822800
PLoS One. 2010 Nov 15;5(11):e13984
pubmed: 21085593
N Engl J Med. 2008 Nov 27;359(22):2324-36
pubmed: 19038879
BMC Med Genomics. 2021 Sep 3;14(1):216
pubmed: 34479557
Nucleic Acids Res. 2015 Apr 20;43(7):e47
pubmed: 25605792
Trends Cardiovasc Med. 2011 May;21(4):105-12
pubmed: 22681965
J Am Coll Cardiol. 2018 Jun 5;71(22):2511-2522
pubmed: 29852975
J Am Coll Cardiol. 2009 Jun 30;54(1):49-57
pubmed: 19555840
Bioinformatics. 2010 Oct 1;26(19):2363-7
pubmed: 20688976
Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50
pubmed: 16199517
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Radiology. 2007 Aug;244(2):419-28
pubmed: 17641365
Bioinformatics. 2013 Jan 1;29(1):15-21
pubmed: 23104886
Front Endocrinol (Lausanne). 2021 Nov 03;12:750773
pubmed: 34803915
Physiol Genomics. 2012 Jan 18;44(1):59-75
pubmed: 22045913
J Cardiovasc Comput Tomogr. 2021 Jan-Feb;15(1):73-80
pubmed: 32563713
JACC Cardiovasc Imaging. 2020 Aug;13(8):1704-1717
pubmed: 31422137
Eur J Prev Cardiol. 2022 Feb 19;29(1):5-115
pubmed: 34558602
Eur Heart J Cardiovasc Imaging. 2020 Feb 1;21(2):191-201
pubmed: 31093656
Nat Rev Dis Primers. 2019 Aug 16;5(1):56
pubmed: 31420554
Circ Cardiovasc Imaging. 2015 Feb;8(2):e002332
pubmed: 25666717
J Atheroscler Thromb. 2017 Nov 1;24(11):1174-1185
pubmed: 28674321
Biomedicines. 2020 Jun 18;8(6):
pubmed: 32570831
Circ Genom Precis Med. 2018 Dec;11(12):e002387
pubmed: 30562118
Bioinformatics. 2003 Jan 22;19(2):185-93
pubmed: 12538238
Circ Res. 2019 Jan 18;124(2):315-327
pubmed: 30653442
BMC Med Genomics. 2021 Feb 10;14(1):45
pubmed: 33568140
Proc Natl Acad Sci U S A. 2008 Dec 2;105(48):18718-23
pubmed: 19033188