Parallel tempering strategies for model-based landmark detection on shapes.

Markov chain Monte Carlo elastic metric landmarks parallel tempering shape analysis

Journal

Communications in statistics: Simulation and computation
ISSN: 0361-0918
Titre abrégé: Commun Stat Simul Comput
Pays: United States
ID NLM: 101570578

Informations de publication

Date de publication:
2022
Historique:
entrez: 27 6 2022
pubmed: 28 6 2022
medline: 28 6 2022
Statut: ppublish

Résumé

In the field of shape analysis, landmarks are defined as a low-dimensional, representative set of important features of an object's shape that can be used to identify regions of interest along its outline. An important problem is to infer the number and arrangement of landmarks, given a set of shapes drawn from a population. One proposed approach defines a posterior distribution over landmark locations by associating each landmark configuration with a linear reconstruction of the shape. In practice, sampling from the resulting posterior density is challenging using standard Markov chain Monte Carlo (MCMC) methods because multiple configurations of landmarks can describe a complex shape similarly well, manifesting in a multi-modal posterior with well-separated modes. Standard MCMC methods traverse multi-modal posteriors poorly and, even when multiple modes are identified, the relative amount of time spent in each one can be misleading. We apply new advances in the parallel tempering literature to the problem of landmark detection, providing guidance on implementation generalized to other applications within shape analysis. Proposal adaptation is used during burn-in to ensure efficient traversal of the parameter space while maintaining computational efficiency. We demonstrate this algorithm on simulated data and common shapes obtained from computer vision scenes.

Identifiants

pubmed: 35755486
doi: 10.1080/03610918.2019.1670843
pmc: PMC9216184
mid: NIHMS1543892
doi:

Types de publication

Journal Article

Langues

eng

Pagination

1415-1435

Subventions

Organisme : NCI NIH HHS
ID : R37 CA214955
Pays : United States

Références

J Chem Phys. 2005 May 22;122(20):206101
pubmed: 15945778
Int J Comput Vis. 2009 Mar 1;81(3):331-355
pubmed: 21076692
IEEE Trans Pattern Anal Mach Intell. 2011 Jul;33(7):1415-28
pubmed: 20921581
J Am Stat Assoc. 2019;114(527):1002-1017
pubmed: 31595098
Stat Med. 2011 May 10;30(10):1137-56
pubmed: 21341300
Med Image Anal. 2014 Apr;18(3):487-99
pubmed: 24561486
Phys Rev Lett. 1986 Nov 24;57(21):2607-2609
pubmed: 10033814
IEEE Trans Syst Man Cybern B Cybern. 2010 Oct;40(5):1319-30
pubmed: 20129866
Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2007 Jul 16;2007(17-22 June 2007):1-7
pubmed: 21311729

Auteurs

Justin Strait (J)

Department of Statistics, University of Georgia.

Oksana Chkrebtii (O)

Department of Statistics, The Ohio State University.

Sebastian Kurtek (S)

Department of Statistics, The Ohio State University.

Classifications MeSH