Time-Resolved Fluorescence Microscopy Screens on Host Protein Subversion During Bacterial Cell Invasion.

BAR domain-containing proteins Bacterial infection High-content screening Intracellular bacterial pathogens Membrane trafficking Rab GTPases Shigella flexneri

Journal

Methods in molecular biology (Clifton, N.J.)
ISSN: 1940-6029
Titre abrégé: Methods Mol Biol
Pays: United States
ID NLM: 9214969

Informations de publication

Date de publication:
2022
Historique:
entrez: 27 6 2022
pubmed: 28 6 2022
medline: 30 6 2022
Statut: ppublish

Résumé

Intracellular bacterial pathogens have evolved a plethora of strategies to invade eukaryotic cells. By manipulating host signaling pathways, in particular vesicular trafficking, these microbes subvert host functions to promote their internalization and to establish an intracellular niche. During these events, host endomembrane compartments are dynamically reorganized. Shigella flexneri, the causative agent of bacillary dysentery, recruits components of the host recycling pathway and the exocyst of non-phagocytic enterocytes in the vicinity of its entry site to facilitate its access to the host cytosol. These factors are either dynamically tethered to in situ formed macropinosomes or to the bacteria-containing vacuole itself. The underlying interactions cannot readily be monitored as individual bacterial infection events take place without synchronicity using cellular infection models. Therefore, time-resolved screens by fluorescence microscopy represent a powerful tool for the study of host subversion. Such screens can be performed with libraries of fluorescently tagged host factors. Using the cytosolic pathogenic agent Shigella flexneri as a model, we provide detailed protocols for such medium-to-high throughput multidimensional imaging screening of the dynamic host-pathogen cross talk. Our workflow is designed to be easily adapted for the study of different host factor libraries and different pathogen models.

Identifiants

pubmed: 35759194
doi: 10.1007/978-1-0716-2449-4_8
doi:

Substances chimiques

Bacterial Proteins 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

113-131

Informations de copyright

© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Références

Cossart P, Sansonetti PJ (2004) Bacterial invasion: the paradigms of enteroinvasive pathogens. Science. https://doi.org/10.1126/science.1090124
Voznica J, Gardella C, Belotserkovsky I, Dufour A, Enninga J, Stévenin V (2017) Identification of parameters of host cell vulnerability during salmonella infection by quantitative image analysis and modeling. Infect Immun. https://doi.org/10.1128/IAI.00644-17
Rengarajan M, Theriot JA (2020) Rapidly dynamic host cell heterogeneity in bacterial adhesion governs susceptibility to infection by Listeria monocytogenes. Mol Biol Cell. https://doi.org/10.1091/mbc.E19-08-0454
Ortega FE, Koslover EF, Theriot JA (2019) Listeria monocytogenes cell-to-cell spread in epithelia is heterogeneous and dominated by rare pioneer bacteria. elife. https://doi.org/10.7554/eLife.40032
Lorkowski M, Felipe-López A, Danzer CA, Hansmeier N, Hensel M (2014) Salmonella enterica invasion of polarized epithelial cells is a highly cooperative effort. Infect Immun. https://doi.org/10.1128/IAI.00023-14
Fredlund J, Santos JC, Stévenin V, Weiner A, Latour-Lambert P, Rechav K, Mallet A, Krijnse-Locker J, Elbaum M, Enninga J (2018) The entry of Salmonella in a distinct tight compartment revealed at high temporal and ultrastructural resolution. Cell Microbiol. https://doi.org/10.1111/cmi.12816
Malik-Kale P, Winfree S, Steele-Mortimer O (2012) The bimodal lifestyle of intracellular Salmonella in epithelial cells: replication in the cytosol obscures defects in vacuolar replication. PLoS One. https://doi.org/10.1371/journal.pone.0038732
Stévenin V, Chang YY, Le Toquin Y, Duchateau M, Gianetto QG, Luk CH, Salles A, Sohst V, Matondo M, Reiling N, Enninga J (2019) Dynamic growth and shrinkage of the Salmonella-containing vacuole determines the intracellular pathogen niche. Cell Rep. https://doi.org/10.1016/j.celrep.2019.11.049
Luk CH, Valenzuela C, Gil M, Swistak L, Bomme P, Chang YY, Mallet A, Enninga J (2021) Salmonella enters a dormant state within human epithelial cells for persistent infection. PLoS Pathog. https://doi.org/10.1371/journal.ppat.1009550
Schroeder GN, Hilbi H (2008) Molecular pathogenesis of Shigella spp.: controlling host cell signaling, invasion, and death by type III secretion. Clin Microbiol Rev. https://doi.org/10.1128/CMR.00032-07
Ehsani S, Santos JC, Rodrigues CD, Henriques R, Audry L, Zimmer C, Sansonetti P, Tran Van Nhieu G, Enninga J (2012) Hierarchies of host factor dynamics at the entry site of Shigella flexneri during host cell invasion. Infect Immun. https://doi.org/10.1128/IAI.06391-11
Weiner A, Mellouk N, Lopez-Montero N, Chang YY, Souque C, Schmitt C, Enninga J (2016) Macropinosomes are key players in early Shigella invasion and vacuolar escape in epithelial cells. PLoS Pathog. https://doi.org/10.1371/journal.ppat.1005602
Kühn S, Bergqvist J, Gil M, Valenzuela C, Barrio L, Lebreton S, Zurzolo C, Enninga J (2020) Actin assembly around the Shigella-containing vacuole promotes successful infection. Cell Rep. https://doi.org/10.1016/j.celrep.2020.107638
Ray K, Bobard A, Danckaert A, Paz-Haftel I, Clair C, Ehsani S, Tang C, Sansonetti P, Tran GV, Enninga J (2010) Tracking the dynamic interplay between bacterial and host factors during pathogen-induced vacuole rupture in real time. Cell Microbiol. https://doi.org/10.1111/j.1462-5822.2010.01428.x
Mellouk N, Weiner A, Aulner N, Schmitt C, Elbaum M, Shorte SL, Danckaert A, Enninga J (2014) Shigella subverts the host recycling compartment to rupture its vacuole. Cell Host Microbe. https://doi.org/10.1016/j.chom.2014.09.005
Brumell JH, Scidmore MA (2007) Manipulation of rab GTPase function by intracellular bacterial pathogens. Microbiol Mol Biol Rev. https://doi.org/10.1128/MMBR.00023-07
Chang YY, Stévenin V, Duchateau M, Giai Gianetto Q, Hourdel V, Rodrigues CD, Matondo M, Reiling N, Enninga J (2020) Shigella hijacks the exocyst to cluster macropinosomes for efficient vacuolar escape. PLoS Pathog. https://doi.org/10.1371/journal.ppat.1008822
Perlman ZE, Slack MD, Feng Y, Mitchison TJ, Wu LF, Altschuler SJ (2004) Multidimensional drug profiling by automated microscopy. Science. https://doi.org/10.1126/science.1100709
Conrad C, Gerlich DW (2010) Automated microscopy for high-content RNAi screening. J Cell Biol. https://doi.org/10.1083/jcb.200910105
Mohr S, Bakal C, Perrimon N (2010) Genomic screening with RNAi: results and challenges. Annu Rev Biochem. https://doi.org/10.1146/annurev-biochem-060408-092949
Pepperkok R, Ellenberg J (2006) High-throughput fluorescence microscopy for systems biology. Nat Rev Mol Cell Biol. https://doi.org/10.1038/nrm1979
Sönnichsen B, Koski LB, Walsh A, Marschall P, Neumann B, Brehm M, Alleaume AM, Artelt J, Bettencourt P, Cassin E, Hewitson M, Holz C, Khan M, Lazik S, Martin C, Nitzsche B, Ruer M, Stamford J, Winzi M, Heinkel R, Röder M, Finell J, Häntsch H, Jones SJ, Jones M, Piano F, Gunsalus KC, Oegema K, Gönczy P, Coulson A, Hyman AA, Echeverri CJ (2005) Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans. Nature. https://doi.org/10.1038/nature03353
Sansonetti PJ, Kopecko DJ, Formal SB (1982) Involvement of a plasmid in the invasive ability of Shigella flexneri. Infect Immun. https://doi.org/10.1128/iai.35.3.852-860.1982
Nowicki B, Hart A, Coyne KE, Lublin DM, Nowicki S (1993) Short consensus repeat-3 domain of recombinant decay-accelerating factor is recognized by Escherichia coli recombinant Dr adhesin in a model of a cell-cell interaction. J Exp Med. https://doi.org/10.1084/jem.178.6.2115
Allaoui A, Sansonetti PJ, Parsot C (1993) MxiD, an outer membrane protein necessary for the secretion of the Shigella flexneri lpa invasins. Mol Microbiol. https://doi.org/10.1111/j.1365-2958.1993.tb01097.x
Sansonetti PJ, Ryter A, Clerc P, Maurelli AT, Mounier J (1986) Multiplication of Shigella flexneri within HeLa cells: lysis of the phagocytic vacuole and plasmid-mediated contact hemolysis. Infect Immun. https://doi.org/10.1128/iai.51.2.461-469.1986
Chan Wah Hak L, Khan S, Di Meglio I, Law AL, Lucken-Ardjomande Häsler S, Quintaneiro LM, Ferreira APA, Krause M, McMahon HT, Boucrot E (2018) FBP17 and CIP4 recruit SHIP2 and lamellipodin to prime the plasma membrane for fast endophilin-mediated endocytosis. Nat Cell Biol. https://doi.org/10.1038/s41556-018-0146-8
Paz I, Sachse M, Dupont N, Mounier J, Cederfur C, Enninga J, Leffler H, Poirier F, Prevost MC, Lafont F, Sansonetti P (2010) Galectin-3, a marker for vacuole lysis by invasive pathogens. Cell Microbiol. https://doi.org/10.1111/j.1462-5822.2009.01415.x
Green MR, Sambrook J (2018) The Hanahan method for preparation and transformation of competent Escherichia coli: high-efficiency transformation. Cold Spring Harb Protoc. https://doi.org/10.1101/pdb.prot101188
Qadri F, Hossain SA, Ciznár I, Haider K, Ljungh A, Wadstrom T, Sack DA (1988) Congo red binding and salt aggregation as indicators of virulence in Shigella species. J Clin Microbiol. https://doi.org/10.1128/jcm.26.7.1343-1348.1988
Olivo-Marin J-C (2002) Extraction of spots in biological images using multiscale products. Pattern Recogn 35:1989–1996
doi: 10.1016/S0031-3203(01)00127-3
Tinevez JY, Perry N, Schindelin J, Hoopes GM, Reynolds GD, Laplantine E, Bednarek SY, Shorte SL, Eliceiri KW (2017) TrackMate: an open and extensible platform for single-particle tracking. Methods. https://doi.org/10.1016/j.ymeth.2016.09.016

Auteurs

Lisa Sanchez (L)

Dynamics of Host-Pathogen Interactions Unit, Institut Pasteur, UMR3691 CNRS, Paris, France.
Université de Paris, Sorbonne Paris Cite, Paris, France.

Yuen-Yan Chang (YY)

Dynamics of Host-Pathogen Interactions Unit, Institut Pasteur, UMR3691 CNRS, Paris, France.
Division of Molecular and Cellular Biology, National Institute of Child Health and Human Development, NIH, Bethesda, MD, USA.

Nora Mellouk (N)

Dynamics of Host-Pathogen Interactions Unit, Institut Pasteur, UMR3691 CNRS, Paris, France.

Jost Enninga (J)

Dynamics of Host-Pathogen Interactions Unit, Institut Pasteur, UMR3691 CNRS, Paris, France. jost.enninga@pasteur.fr.

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