PSHG-TISS: A collection of polarization-resolved second harmonic generation microscopy images of fixed tissues.

Animals Collagen Humans Image Processing, Computer-Assisted Second Harmonic Generation Microscopy Tissue Fixation

Journal

Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192

Informations de publication

Date de publication:
02 07 2022
Historique:
received: 14 01 2022
accepted: 13 06 2022
entrez: 2 7 2022
pubmed: 3 7 2022
medline: 8 7 2022
Statut: epublish

Résumé

Second harmonic generation (SHG) microscopy is acknowledged as an established imaging technique capable to provide information on the collagen architecture in tissues that is highly valuable for the diagnostics of various pathologies. The polarization-resolved extension of SHG (PSHG) microscopy, together with associated image processing methods, retrieves extensive image sets under different input polarization settings, which are not fully exploited in clinical settings. To facilitate this, we introduce PSHG-TISS, a collection of PSHG images, accompanied by additional computationally generated images which can be used to complement the subjective qualitative analysis of SHG images. These latter have been calculated using the single-axis molecule model for collagen and provide 2D representations of different specific PSHG parameters known to account for the collagen structure and distribution. PSHG-TISS can aid refining existing PSHG image analysis methods, while also supporting the development of novel image processing and analysis methods capable to extract meaningful quantitative data from the raw PSHG image sets. PSHG-TISS can facilitate the breadth and widespread of PSHG applications in tissue analysis and diagnostics.

Identifiants

DOI: 10.1038/s41597-022-01477-1 PMID: 35780180 PMC: PMC9250519
pubmed: 35780180
doi: 10.1038/s41597-022-01477-1
pii: 10.1038/s41597-022-01477-1
pmc: PMC9250519
doi:

Substances chimiques

Collagen 9007-34-5

Types de publication

Dataset Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

376

Informations de copyright

© 2022. The Author(s).

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Auteurs

Radu Hristu (R)

Center for Microscopy-Microanalysis and Information Processing, University Politehnica of Bucharest, 060042, Bucharest, Romania.
ORCID: 0000-0001-8051-8253

Stefan G Stanciu (SG)

Center for Microscopy-Microanalysis and Information Processing, University Politehnica of Bucharest, 060042, Bucharest, Romania.

Adrian Dumitru (A)

Department of Pathology, Carol Davila University of Medicine and Pharmacy, Bucharest, Romania.
Department of Pathology, Emergency University Hospital, Bucharest, Romania.

Lucian G Eftimie (LG)

Center for Microscopy-Microanalysis and Information Processing, University Politehnica of Bucharest, 060042, Bucharest, Romania.
Department of Pathology, Central University Emergency Military Hospital, Bucharest, Romania.

Bogdan Paun (B)

Faculty of Automation and Computer Science, Technical University of Cluj-Napoca, 40002, Cluj-Napoca, Romania.

Denis E Tranca (DE)

Center for Microscopy-Microanalysis and Information Processing, University Politehnica of Bucharest, 060042, Bucharest, Romania.

Pavel Gheorghita (P)

Center for Microscopy-Microanalysis and Information Processing, University Politehnica of Bucharest, 060042, Bucharest, Romania.
Faculty of Energetics, University Politehnica of Bucharest, Bucharest, Romania.

Mariana Costache (M)

Department of Pathology, Carol Davila University of Medicine and Pharmacy, Bucharest, Romania.
Department of Pathology, Emergency University Hospital, Bucharest, Romania.

George A Stanciu (GA)

Center for Microscopy-Microanalysis and Information Processing, University Politehnica of Bucharest, 060042, Bucharest, Romania. stanciu@physics.pub.ro.

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › PSHG-TISS: A collection of...
questionsmedicales.fr › Acides aminés, peptides et protéines › Protéines › Scléroprotéines › Protéines de la matrice extracellulaire › Collagène › PSHG-TISS: A collection of...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Hominidae › Humains › PSHG-TISS: A collection of...
questionsmedicales.fr › Sciences de l'information › Méthodologies informatiques › Traitement d'image par ordinateur › PSHG-TISS: A collection of...
questionsmedicales.fr › Techniques d'investigation › Microscopie optique non linéaire › Microscopie par génération de second harmonique › PSHG-TISS: A collection of...
questionsmedicales.fr › Techniques d'investigation › Techniques de laboratoire clinique › Techniques histologiques › Techniques de préparation histocytologique › Fixation tissulaire › PSHG-TISS: A collection of...