Thicker Ice Improves the Integrity and Angular Distribution of CDC48A Hexamers on Cryo-EM Grids.

cryo-electron microscopy grid preparation ice thickness oligomer disassembly optimization particle integrity preferential orientation single particle analysis

Journal

Frontiers in molecular biosciences
ISSN: 2296-889X
Titre abrégé: Front Mol Biosci
Pays: Switzerland
ID NLM: 101653173

Informations de publication

Date de publication:
2022
Historique:
received: 05 03 2022
accepted: 26 05 2022
entrez: 5 7 2022
pubmed: 6 7 2022
medline: 6 7 2022
Statut: epublish

Résumé

Many cryogenic electron microscopy (cryo-EM) single particle analyses are constrained by the sample preparation step upon which aggregation, dissociation, and/or preferential orientation of particles can be introduced. Here, we report how we solved these problems in the case of CDC48A, a hexameric AAA ATPase from

Identifiants

pubmed: 35782862
doi: 10.3389/fmolb.2022.890390
pii: 890390
pmc: PMC9247313
doi:

Types de publication

Journal Article

Langues

eng

Pagination

890390

Informations de copyright

Copyright © 2022 Huntington, Zhao, Bron, Shahul Hameed, Arold and Qureshi.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Références

Acta Crystallogr D Struct Biol. 2018 Jun 1;74(Pt 6):560-571
pubmed: 29872006
Biochem J. 2017 Aug 17;474(17):2953-2976
pubmed: 28819009
ACS Nano. 2021 Mar 23;15(3):4186-4196
pubmed: 33586425
J Microsc. 2019 Oct;276(1):39-45
pubmed: 31553060
Acta Crystallogr D Struct Biol. 2021 May 1;77(Pt 5):565-571
pubmed: 33950013
Science. 2016 Feb 19;351(6275):871-5
pubmed: 26822609
J Struct Biol. 2018 Oct;204(1):38-44
pubmed: 29981485
Biochem J. 2021 Dec 22;478(24):4169-4185
pubmed: 34783343
Nat Commun. 2021 Jan 5;12(1):121
pubmed: 33402676
Nat Commun. 2021 Oct 19;12(1):6095
pubmed: 34667155
Assay Drug Dev Technol. 2009 Dec;7(6):560-72
pubmed: 20105026
Science. 2014 Mar 28;343(6178):1443-4
pubmed: 24675944
Nat Commun. 2017 Sep 20;8(1):629
pubmed: 28931821
Nat Methods. 2019 Nov;16(11):1153-1160
pubmed: 31591578
Nat Methods. 2017 Aug;14(8):793-796
pubmed: 28671674
J Struct Biol. 2018 May;202(2):170-174
pubmed: 29317278
Proc Natl Acad Sci U S A. 2020 Sep 29;117(39):24269-24273
pubmed: 32913054
Science. 2019 Feb 22;363(6429):
pubmed: 30792274
Mol Cell. 2015 May 21;58(4):677-89
pubmed: 26000851
Nat Methods. 2017 Mar;14(3):290-296
pubmed: 28165473
Nat Commun. 2020 Jun 29;11(1):3284
pubmed: 32601292
Science. 2021 Aug 20;373(6557):871-876
pubmed: 34282049
J Struct Biol. 2016 Jan;193(1):1-12
pubmed: 26592709
J Struct Biol. 2015 Nov;192(2):216-21
pubmed: 26278980
Microscopy (Oxf). 2022 Feb 18;71(Supplement_1):i30-i50
pubmed: 35275191
IUCrJ. 2020 Feb 11;7(Pt 2):253-267
pubmed: 32148853
Nature. 2021 Aug;596(7873):583-589
pubmed: 34265844
Proc Natl Acad Sci U S A. 2020 Jan 14;117(2):1009-1014
pubmed: 31879346
Science. 2019 Aug 2;365(6452):
pubmed: 31249135
J Biol Chem. 2021 Oct;297(4):101187
pubmed: 34520757
Front Plant Sci. 2014 Apr 30;5:162
pubmed: 24817869
J Struct Biol. 2016 Aug;195(2):190-198
pubmed: 27288865
Plant J. 2016 Oct;88(2):294-305
pubmed: 27340941
Science. 2019 Aug 2;365(6452):502-505
pubmed: 31249134
J Appl Crystallogr. 2021 Feb 01;54(Pt 1):343-355
pubmed: 33833657
Nat Struct Biol. 2003 Oct;10(10):856-63
pubmed: 12949490
Structure. 2020 Nov 3;28(11):1238-1248.e4
pubmed: 32814033
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W540-4
pubmed: 20507903
Nucleic Acids Res. 2018 Jul 2;46(W1):W296-W303
pubmed: 29788355
J Struct Biol. 2018 May;202(2):161-169
pubmed: 29366716
Nat Methods. 2019 Nov;16(11):1146-1152
pubmed: 31591575
Structure. 2022 Apr 7;30(4):522-531.e4
pubmed: 35150604

Auteurs

Brandon Huntington (B)

Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Computational Biology Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Lingyun Zhao (L)

Imaging and Characterization Core Lab, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Patrick Bron (P)

Centre de Biologie Structurale (CBS), INSERM, CNRS, Université de Montpellier, Montpellier, France.

Umar F Shahul Hameed (UF)

Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Computational Biology Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Stefan T Arold (ST)

Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Computational Biology Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Centre de Biologie Structurale (CBS), INSERM, CNRS, Université de Montpellier, Montpellier, France.

Bilal M Qureshi (BM)

Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Computational Biology Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Division of Structural Biology (Strubi), University of Oxford, Oxford, United Kingdom.
Scientific Center of Optical and Electron Microscopy (ScopeM), ETH Zurich, Zurich, Switzerland.

Classifications MeSH