Reference Genome of the Black Surfperch, Embiotoca jacksoni (Embiotocidae, Perciformes), a California Kelp Forest Fish That Lacks a Pelagic Larval Stage.
CCGP
California Conservation Genomics Project
Marine Protected Areas
Journal
The Journal of heredity
ISSN: 1465-7333
Titre abrégé: J Hered
Pays: United States
ID NLM: 0375373
Informations de publication
Date de publication:
30 11 2022
30 11 2022
Historique:
received:
12
04
2022
accepted:
07
07
2022
pubmed:
10
7
2022
medline:
2
12
2022
entrez:
9
7
2022
Statut:
ppublish
Résumé
Surfperches (Family Embiotocidae) are viviparous temperate reef fishes that brood their young. This life history trait translates into limited dispersal, strong population structure, and an unusually strong potential for local adaptation in a marine fish. As part of the California Conservation Genomics Project (CCGP), we sequenced the genome of the Black Surfperch, Embiotoca jacksoni, to establish a genomic model for understanding phylogeographic patterns of marine organisms in California. These patterns, in turn, may inform the design of marine protected areas using dispersal models based on genomic data. The genome of E. jacksoni is typical of marine fishes at less than 1Gb (genome size = 635 Mb), and our assembly is near-chromosome level (contig N50 = 6.5Mb, scaffold N50 = 15.5 Mb, BUSCO = 98.1%). Within the context of the CCGP, the genome will be used as a reference for future whole genome resequencing projects aimed at enhancing our knowledge of the population structure of the species, and efficacy of Marine Protected Areas across the state.
Identifiants
pubmed: 35809222
pii: 6637776
doi: 10.1093/jhered/esac034
pmc: PMC9709976
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
657-664Subventions
Organisme : NIH HHS
ID : 1S10OD010786-01
Pays : United States
Organisme : NIH HHS
ID : S10 OD018174
Pays : United States
Informations de copyright
© The Author(s) 2022. Published by Oxford University Press on behalf of The American Genetic Association.
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