The Medical Segmentation Decathlon.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
15 07 2022
Historique:
received: 16 08 2021
accepted: 13 05 2022
entrez: 15 7 2022
pubmed: 16 7 2022
medline: 20 7 2022
Statut: epublish

Résumé

International challenges have become the de facto standard for comparative assessment of image analysis algorithms. Although segmentation is the most widely investigated medical image processing task, the various challenges have been organized to focus only on specific clinical tasks. We organized the Medical Segmentation Decathlon (MSD)-a biomedical image analysis challenge, in which algorithms compete in a multitude of both tasks and modalities to investigate the hypothesis that a method capable of performing well on multiple tasks will generalize well to a previously unseen task and potentially outperform a custom-designed solution. MSD results confirmed this hypothesis, moreover, MSD winner continued generalizing well to a wide range of other clinical problems for the next two years. Three main conclusions can be drawn from this study: (1) state-of-the-art image segmentation algorithms generalize well when retrained on unseen tasks; (2) consistent algorithmic performance across multiple tasks is a strong surrogate of algorithmic generalizability; (3) the training of accurate AI segmentation models is now commoditized to scientists that are not versed in AI model training.

Identifiants

pubmed: 35840566
doi: 10.1038/s41467-022-30695-9
pii: 10.1038/s41467-022-30695-9
pmc: PMC9287542
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, N.I.H., Intramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

4128

Subventions

Organisme : Wellcome Trust
ID : WT203148
Pays : United Kingdom
Organisme : NIH HHS
ID : S10 OD023495
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS042645
Pays : United States
Organisme : Wellcome Trust
ID : WT213038
Pays : United Kingdom
Organisme : NCI NIH HHS
ID : P30 CA008748
Pays : United States
Organisme : NCI NIH HHS
ID : U01 CA242871
Pays : United States

Informations de copyright

© 2022. The Author(s).

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Auteurs

Michela Antonelli (M)

School of Biomedical Engineering & Imaging Sciences, King's College London, London, UK. michela.antonelli@kcl.ac.uk.

Annika Reinke (A)

Div. Computer Assisted Medical Interventions, German Cancer Research Center (DKFZ), Heidelberg, Germany.
HI Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Faculty of Mathematics and Computer Science, University of Heidelberg, Heidelberg, Germany.

Spyridon Bakas (S)

Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.
Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

Keyvan Farahani (K)

Center for Biomedical Informatics and Information Technology, National Cancer Institute (NIH), Bethesda, MD, USA.

Annette Kopp-Schneider (A)

Div. Biostatistics, German Cancer Research Center (DKFZ), Heidelberg, Germany.

Bennett A Landman (BA)

Electrical Engineering and Computer Science, Vanderbilt University, Nashville, TN, USA.

Geert Litjens (G)

Radboud University Medical Center, Radboud Institute for Health Sciences, Nijmegen, The Netherlands.

Bjoern Menze (B)

Quantitative Biomedicine, University of Zurich, Zurich, Switzerland.

Olaf Ronneberger (O)

DeepMind, London, UK.

Ronald M Summers (RM)

Imaging Biomarkers and Computer-Aided Diagnosis Laboratory, Department of Radiology and Imaging Sciences, National Institutes of Health Clinical Center (NIH), Bethesda, MD, USA.

Bram van Ginneken (B)

Radboud University Medical Center, Radboud Institute for Health Sciences, Nijmegen, The Netherlands.

Michel Bilello (M)

Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.

Patrick Bilic (P)

Department of Informatics, Technische Universität München, München, Germany.

Patrick F Christ (PF)

Department of Informatics, Technische Universität München, München, Germany.

Richard K G Do (RKG)

Department of Radiology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

Marc J Gollub (MJ)

Department of Radiology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

Stephan H Heckers (SH)

Department of Psychiatry & Behavioral Sciences, Vanderbilt University Medical Center, Nashville, TN, USA.

Henkjan Huisman (H)

Radboud University Medical Center, Radboud Institute for Health Sciences, Nijmegen, The Netherlands.

William R Jarnagin (WR)

Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

Maureen K McHugo (MK)

Department of Psychiatry & Behavioral Sciences, Vanderbilt University Medical Center, Nashville, TN, USA.

Sandy Napel (S)

Department of Radiology, Stanford University, Stanford, CA, USA.

Jennifer S Golia Pernicka (JSG)

Department of Radiology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

Kawal Rhode (K)

School of Biomedical Engineering & Imaging Sciences, King's College London, London, UK.

Catalina Tobon-Gomez (C)

School of Biomedical Engineering & Imaging Sciences, King's College London, London, UK.

Eugene Vorontsov (E)

Department of Computer Science and Software Engineering, École Polytechnique de Montréal, Montréal, QC, Canada.

James A Meakin (JA)

Radboud University Medical Center, Radboud Institute for Health Sciences, Nijmegen, The Netherlands.

Sebastien Ourselin (S)

School of Biomedical Engineering & Imaging Sciences, King's College London, London, UK.

Manuel Wiesenfarth (M)

Div. Biostatistics, German Cancer Research Center (DKFZ), Heidelberg, Germany.

Pablo Arbeláez (P)

Universidad de los Andes, Bogota, Colombia.

Sihong Chen (S)

Tencent Jarvis Lab, Shenzhen, China.

Laura Daza (L)

Universidad de los Andes, Bogota, Colombia.

Jianjiang Feng (J)

Department of Automation, Tsinghua University, Beijing, China.

Baochun He (B)

Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.

Fabian Isensee (F)

HI Applied Computer Vision Lab, Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany.

Yuanfeng Ji (Y)

Department of Computer Science, Xiamen University, Xiamen, China.

Fucang Jia (F)

Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.

Ildoo Kim (I)

Kakao Brain, Seongnam-si, Republic of Korea.

Klaus Maier-Hein (K)

Cerebriu A/S, Copenhagen, Denmark.
Pattern Analysis and Learning Group, Department of Radiation Oncology, Heidelberg University Hospital, Heidelberg, Germany.

Dorit Merhof (D)

Institute of Imaging & Computer Vision, RWTH Aachen University, Aachen, Germany.
Fraunhofer Institute for Digital Medicine MEVIS, Bremen, Germany.

Akshay Pai (A)

Cerebriu A/S, Copenhagen, Denmark.
Department of Computer Science, University of Copenhagen, Copenhagen, Denmark.

Beomhee Park (B)

VUNO Inc., Seoul, Korea.

Mathias Perslev (M)

Department of Computer Science, University of Copenhagen, Copenhagen, Denmark.

Ramin Rezaiifar (R)

MaaDoTaa.com, San Diego, CA, USA.

Oliver Rippel (O)

Institute of Imaging & Computer Vision, RWTH Aachen University, Aachen, Germany.

Ignacio Sarasua (I)

Lab for Artificial Intelligence in Medical Imaging (AI-Med), Department of Child and Adolescent Psychiatry, University Hospital, LMU München, Germany.

Wei Shen (W)

MoE Key Lab of Artificial Intelligence, AI Institute, Shanghai Jiao Tong University, Shanghai, China.

Jaemin Son (J)

VUNO Inc., Seoul, Korea.

Christian Wachinger (C)

Lab for Artificial Intelligence in Medical Imaging (AI-Med), Department of Child and Adolescent Psychiatry, University Hospital, LMU München, Germany.

Liansheng Wang (L)

Department of Computer Science, Xiamen University, Xiamen, China.

Yan Wang (Y)

Shanghai Key Laboratory of Multidimensional Information Processing, East China Normal University, Shanghai, China.

Yingda Xia (Y)

Johns Hopkins University, Baltimore, MD, USA.

Daguang Xu (D)

NVIDIA, Santa Clara, CA, USA.

Zhanwei Xu (Z)

Department of Automation, Tsinghua University, Beijing, China.

Yefeng Zheng (Y)

Tencent Jarvis Lab, Shenzhen, China.

Amber L Simpson (AL)

School of Computing/Department of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, Canada.

Lena Maier-Hein (L)

Div. Computer Assisted Medical Interventions, German Cancer Research Center (DKFZ), Heidelberg, Germany.
HI Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Faculty of Mathematics and Computer Science, University of Heidelberg, Heidelberg, Germany.
Medical Faculty, University of Heidelberg, Heidelberg, Germany.

M Jorge Cardoso (MJ)

School of Biomedical Engineering & Imaging Sciences, King's College London, London, UK.

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