Refining nosology by modelling variation among facial phenotypes: the RASopathies.

Diagnosis Methods Phenotype

Journal

Journal of medical genetics
ISSN: 1468-6244
Titre abrégé: J Med Genet
Pays: England
ID NLM: 2985087R

Informations de publication

Date de publication:
20 Jul 2022
Historique:
received: 06 12 2021
accepted: 18 05 2022
pmc-release: 20 01 2024
entrez: 20 7 2022
pubmed: 21 7 2022
medline: 21 7 2022
Statut: aheadofprint

Résumé

In clinical genetics, establishing an accurate nosology requires analysis of variations in both aetiology and the resulting phenotypes. At the phenotypic level, recognising typical facial gestalts has long supported clinical and molecular diagnosis; however, the objective analysis of facial phenotypic variation remains underdeveloped. In this work, we propose exploratory strategies for assessing facial phenotypic variation within and among clinical and molecular disease entities and deploy these techniques on cross-sectional samples of four RASopathies: Costello syndrome (CS), Noonan syndrome (NS), cardiofaciocutaneous syndrome (CFC) and neurofibromatosis type 1 (NF1). From three-dimensional dense surface scans, we model the typical phenotypes of the four RASopathies as average 'facial signatures' and assess individual variation in terms of direction (what parts of the face are affected and in what ways) and severity of the facial effects. We also derive a metric of phenotypic agreement between the syndromes and a metric of differences in severity along similar phenotypes. CFC shows a relatively consistent facial phenotype in terms of both direction and severity that is similar to CS and NS, consistent with the known difficulty in discriminating CFC from NS based on the face. CS shows a consistent directional phenotype that varies in severity. Although NF1 is highly variable, on average, it shows a similar phenotype to CS. We established an approach that can be used in the future to quantify variations in facial phenotypes between and within clinical and molecular diagnoses to objectively define and support clinical nosologies.

Sections du résumé

BACKGROUND BACKGROUND
In clinical genetics, establishing an accurate nosology requires analysis of variations in both aetiology and the resulting phenotypes. At the phenotypic level, recognising typical facial gestalts has long supported clinical and molecular diagnosis; however, the objective analysis of facial phenotypic variation remains underdeveloped. In this work, we propose exploratory strategies for assessing facial phenotypic variation within and among clinical and molecular disease entities and deploy these techniques on cross-sectional samples of four RASopathies: Costello syndrome (CS), Noonan syndrome (NS), cardiofaciocutaneous syndrome (CFC) and neurofibromatosis type 1 (NF1).
METHODS METHODS
From three-dimensional dense surface scans, we model the typical phenotypes of the four RASopathies as average 'facial signatures' and assess individual variation in terms of direction (what parts of the face are affected and in what ways) and severity of the facial effects. We also derive a metric of phenotypic agreement between the syndromes and a metric of differences in severity along similar phenotypes.
RESULTS RESULTS
CFC shows a relatively consistent facial phenotype in terms of both direction and severity that is similar to CS and NS, consistent with the known difficulty in discriminating CFC from NS based on the face. CS shows a consistent directional phenotype that varies in severity. Although NF1 is highly variable, on average, it shows a similar phenotype to CS.
CONCLUSIONS CONCLUSIONS
We established an approach that can be used in the future to quantify variations in facial phenotypes between and within clinical and molecular diagnoses to objectively define and support clinical nosologies.

Identifiants

pubmed: 35858754
pii: jmedgenet-2021-108366
doi: 10.1136/jmedgenet-2021-108366
pmc: PMC9852361
mid: NIHMS1809714
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : NIDCR NIH HHS
ID : R01 DE027023
Pays : United States
Organisme : NIDCR NIH HHS
ID : U01 DE024440
Pays : United States

Informations de copyright

© Author(s) (or their employer(s)) 2022. No commercial re-use. See rights and permissions. Published by BMJ.

Déclaration de conflit d'intérêts

Competing interests: None declared.

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Auteurs

Harold Matthews (H)

Department of Human Genetics, KU Leuven, Leuven, Flemish Brabant, Belgium.
Medical Imaging Research Center, UZ Leuven, Leuven, Flemish Brabant, Belgium.
Facial Sciences Research Group, Murdoch Children's Research Institute, Parkville, Victoria, Australia.

Michiel Vanneste (M)

Department of Human Genetics, KU Leuven, Leuven, Flemish Brabant, Belgium.
Medical Imaging Research Center, UZ Leuven, Leuven, Flemish Brabant, Belgium.

Kaitlin Katsura (K)

Program in Craniofacial Biology, Departments of Orofacial Sciences and Pediatrics, and Institute for Human Genetics, University of California San Francisco, San Francisco, California, USA.

David Aponte (D)

Department of Cell Biology and Anatomy, University of Calgary Cumming School of Medicine, Calgary, Alberta, Canada.

Michael Patton (M)

Medical Genetics Unit, St George's University of London, London, UK.

Peter Hammond (P)

Department of Human Genetics, KU Leuven, Leuven, Flemish Brabant, Belgium.

Gareth Baynam (G)

Western Australian Register of Developmental Anomalies, King Edward Memorial Hospital, Perth, Western Australia, Australia.
Telethon Kids Institute and Division of Paediatrics, Faculty of Health and Medical Sciences, The University of Western Australia, Perth, Western Australia, Australia.
School of Earth and Planetary Sciences, Faculty of Science and Engineering, Curtin University, Perth, Western Australia, Australia.
Faculty of Medicine, Notre Dame University, Fremantle, Western Australia, Australia.

Richard Spritz (R)

Department of Paediatrics, University of Colorado Denver School of Medicine, Aurora, Colorado, USA.

Ophir D Klein (OD)

Program in Craniofacial Biology, Departments of Orofacial Sciences and Pediatrics, and Institute for Human Genetics, University of California San Francisco, San Francisco, California, USA.

Benedikt Hallgrimsson (B)

Department of Cell Biology and Anatomy, University of Calgary Cumming School of Medicine, Calgary, Alberta, Canada.

Hilde Peeters (H)

Department of Human Genetics, KU Leuven, Leuven, Flemish Brabant, Belgium.

Peter Claes (P)

Department of Human Genetics, KU Leuven, Leuven, Flemish Brabant, Belgium peter.claes@kuleuven.be.
Medical Imaging Research Center, UZ Leuven, Leuven, Flemish Brabant, Belgium.
Facial Sciences Research Group, Murdoch Children's Research Institute, Parkville, Victoria, Australia.
Department of Electrical Engineering ESAT/PSI, KU Leuven, Leuven, Flemish Brabant, Belgium.

Classifications MeSH