Verification of Candidate SNP Effects Reveals Two QTLs on BTA7 for Beef Marbling in Two Japanese Black Cattle Populations.

Animals Cattle / genetics Genome-Wide Association Study Linkage Disequilibrium Meat / analysis Polymorphism, Single Nucleotide / genetics Quantitative Trait Loci
GWAS ICAM1 Japanese Black cattle beef marbling meat quality

Journal

Genes
ISSN: 2073-4425
Titre abrégé: Genes (Basel)
Pays: Switzerland
ID NLM: 101551097

Informations de publication

Date de publication:
01 07 2022
Historique:
received: 08 06 2022
revised: 28 06 2022
accepted: 30 06 2022
entrez: 27 7 2022
pubmed: 28 7 2022
medline: 29 7 2022
Statut: epublish

Résumé

In our previous study, we used genome resequencing to detect all candidate polymorphisms within a quantitative trait loci (QTL) region for beef marbling reported previously at 10-30 Mbp on bovine chromosome 7, and we selected 6044 polymorphisms as candidate quantitative trait nucleotides (QTNs). In the present study, we aimed to identify quantitative trait genes (QTGs) and QTNs in this QTL region by verifying the effect of SNPs on beef marbling in two Japanese Black cattle populations using a Dynamic Array integrated fluidic circuit. In total, 96 selected SNPs were genotyped in 441 and 529 animals in Hyogo and Miyazaki cattle populations, respectively. The most significant

Identifiants

DOI: 10.3390/genes13071190 PMID: 35885973 PMC: PMC9320647
pubmed: 35885973
pii: genes13071190
doi: 10.3390/genes13071190
pmc: PMC9320647
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

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Auteurs

Shinji Sasazaki (S)

Laboratory of Animal Breeding and Genetics, Graduate School of Agricultural Science, Kobe University, Kobe 657-8501, Japan.

Raito Yamamoto (R)

Laboratory of Animal Breeding and Genetics, Graduate School of Agricultural Science, Kobe University, Kobe 657-8501, Japan.

Shintaro Toyomoto (S)

Laboratory of Animal Breeding and Genetics, Graduate School of Agricultural Science, Kobe University, Kobe 657-8501, Japan.

Hina Kondo (H)

Laboratory of Animal Breeding and Genetics, Graduate School of Agricultural Science, Kobe University, Kobe 657-8501, Japan.

Takayuki Akiyama (T)

Hokubu Agricultural Technology Institute, Hyogo Prefectural Technology Center for Agriculture, Forestry & Fisheries, Asago 669-5254, Japan.

Namiko Kohama (N)

Hokubu Agricultural Technology Institute, Hyogo Prefectural Technology Center for Agriculture, Forestry & Fisheries, Asago 669-5254, Japan.

Emi Yoshida (E)

Hyogo Prefectural Technology Center for Agriculture, Forestry and Fisheries, Kasai 679-0198, Japan.

Fuki Kawaguchi (F)

Laboratory of Animal Breeding and Genetics, Graduate School of Agricultural Science, Kobe University, Kobe 657-8501, Japan.

Kenji Oyama (K)

Food Resources Education & Research Center, Kobe University, Kasai 675-2103, Japan.

Hideyuki Mannen (H)

Laboratory of Animal Breeding and Genetics, Graduate School of Agricultural Science, Kobe University, Kobe 657-8501, Japan.

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › Verification of Candidate SNP Effects Reveals...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Artiodactyla › Ruminants › Bovins › Verification of Candidate SNP Effects Reveals...
questionsmedicales.fr › Environnement et santé publique › Santé publique › Méthodes épidémiologiques › Épidémiologie moléculaire › Étude d'association pangénomique › Verification of Candidate SNP Effects Reveals...
questionsmedicales.fr › Phénomènes génétiques › Liaison génétique › Déséquilibre de liaison › Verification of Candidate SNP Effects Reveals...
questionsmedicales.fr › Aliments et boissons › Aliments › Viande › Verification of Candidate SNP Effects Reveals...
questionsmedicales.fr › Phénomènes génétiques › Variation génétique › Polymorphisme génétique › Polymorphisme de nucléotide simple › Verification of Candidate SNP Effects Reveals...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Composants de génome › Locus génétiques › Locus de caractère quantitatif › Verification of Candidate SNP Effects Reveals...