Mortality Prediction Analysis among COVID-19 Inpatients Using Clinical Variables and Deep Learning Chest Radiography Imaging Features.
COVID
chest radiographs
computer-aided diagnosis/prognosis
explainable AI
machine learning
multi-modal analysis
transfer learning
Journal
Tomography (Ann Arbor, Mich.)
ISSN: 2379-139X
Titre abrégé: Tomography
Pays: Switzerland
ID NLM: 101671170
Informations de publication
Date de publication:
13 07 2022
13 07 2022
Historique:
received:
11
05
2022
revised:
04
07
2022
accepted:
07
07
2022
entrez:
27
7
2022
pubmed:
28
7
2022
medline:
29
7
2022
Statut:
epublish
Résumé
The emergence of the COVID-19 pandemic over a relatively brief interval illustrates the need for rapid data-driven approaches to facilitate clinical decision making. We examined a machine learning process to predict inpatient mortality among COVID-19 patients using clinical and chest radiographic data. Modeling was performed with a de-identified dataset of encounters prior to widespread vaccine availability. Non-imaging predictors included demographics, pre-admission clinical history, and past medical history variables. Imaging features were extracted from chest radiographs by applying a deep convolutional neural network with transfer learning. A multi-layer perceptron combining 64 deep learning features from chest radiographs with 98 patient clinical features was trained to predict mortality. The Local Interpretable Model-Agnostic Explanations (LIME) method was used to explain model predictions. Non-imaging data alone predicted mortality with an ROC-AUC of 0.87 ± 0.03 (mean ± SD), while the addition of imaging data improved prediction slightly (ROC-AUC: 0.91 ± 0.02). The application of LIME to the combined imaging and clinical model found HbA1c values to contribute the most to model prediction (17.1 ± 1.7%), while imaging contributed 8.8 ± 2.8%. Age, gender, and BMI contributed 8.7%, 8.2%, and 7.1%, respectively. Our findings demonstrate a viable explainable AI approach to quantify the contributions of imaging and clinical data to COVID mortality predictions.
Identifiants
pubmed: 35894016
pii: tomography8040151
doi: 10.3390/tomography8040151
pmc: PMC9326627
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Pagination
1791-1803Subventions
Organisme : NIH HHS
ID : 75N92020D00021
Pays : United States
Références
Front Digit Health. 2022 Jan 13;3:681608
pubmed: 35098205
AJR Am J Roentgenol. 2000 Jan;174(1):71-4
pubmed: 10628457
Biocybern Biomed Eng. 2020 Oct-Dec;40(4):1391-1405
pubmed: 32921862
Med Image Anal. 2006 Feb;10(1):19-40
pubmed: 15919232
J Pathol. 2021 Jan;253(1):31-40
pubmed: 32930394
IEEE Rev Biomed Eng. 2021;14:4-15
pubmed: 32305937
Lancet Digit Health. 2021 May;3(5):e286-e294
pubmed: 33773969
Eur Radiol. 2022 Jul;32(7):4446-4456
pubmed: 35184218
Radiology. 2020 Aug;296(2):E32-E40
pubmed: 32101510
Radiology. 2021 Mar;298(3):E162-E164
pubmed: 33350895
J Digit Imaging. 2013 Dec;26(6):1045-57
pubmed: 23884657
PLoS One. 2017 Dec 21;12(12):e0190069
pubmed: 29267360
PeerJ. 2020 Nov 06;8:e10337
pubmed: 33194455
IEEE Trans Med Imaging. 2020 Aug;39(8):2688-2700
pubmed: 32396075
Eur Respir J. 2020 Sep 10;56(3):
pubmed: 32675205
BMC Med Inform Decis Mak. 2022 Jan 4;22(1):2
pubmed: 34983496
Sci Rep. 2020 Nov 11;10(1):19549
pubmed: 33177550
Diabetes Metab Res Rev. 2022 Jan;38(1):e3476
pubmed: 34018307
Nat Med. 2020 Aug;26(8):1224-1228
pubmed: 32427924
Radiology. 2020 Aug;296(2):E15-E25
pubmed: 32083985
PeerJ Comput Sci. 2022 Mar 17;8:e889
pubmed: 35494832
Nature. 2020 Mar;579(7798):265-269
pubmed: 32015508
Diagnostics (Basel). 2021 Jul 31;11(8):
pubmed: 34441317