Ancient herpes simplex 1 genomes reveal recent viral structure in Eurasia.
Journal
Science advances
ISSN: 2375-2548
Titre abrégé: Sci Adv
Pays: United States
ID NLM: 101653440
Informations de publication
Date de publication:
29 Jul 2022
29 Jul 2022
Historique:
entrez:
27
7
2022
pubmed:
28
7
2022
medline:
28
7
2022
Statut:
ppublish
Résumé
Human herpes simplex virus 1 (HSV-1), a life-long infection spread by oral contact, infects a majority of adults globally. Phylogeographic clustering of sampled diversity into European, pan-Eurasian, and African groups has suggested the virus codiverged with human migrations out of Africa, although a much younger origin has also been proposed. We present three full ancient European HSV-1 genomes and one partial genome, dating from the 3rd to 17th century CE, sequenced to up to 9.5× with paired human genomes up to 10.16×. Considering a dataset of modern and ancient genomes, we apply phylogenetic methods to estimate the age of sampled modern Eurasian HSV-1 diversity to 4.68 (3.87 to 5.65) ka. Extrapolation of estimated rates to a global dataset points to the age of extant sampled HSV-1 as 5.29 (4.60 to 6.12) ka, suggesting HSV-1 lineage replacement coinciding with the late Neolithic period and following Bronze Age migrations.
Identifiants
pubmed: 35895820
doi: 10.1126/sciadv.abo4435
pmc: PMC9328674
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
eabo4435Subventions
Organisme : Wellcome Trust
ID : 200368/Z/15/Z
Pays : United Kingdom
Commentaires et corrections
Type : CommentIn
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