Data collection from crystals grown in microfluidic droplets.

X-ray data collection emulsions fixed targets fucosidases hydrolases low dose microfluidic droplets serial crystallography sialate O-acetylesterase α–β fold

Journal

Acta crystallographica. Section D, Structural biology
ISSN: 2059-7983
Titre abrégé: Acta Crystallogr D Struct Biol
Pays: United States
ID NLM: 101676043

Informations de publication

Date de publication:
01 Aug 2022
Historique:
received: 06 11 2021
accepted: 02 05 2022
entrez: 2 8 2022
pubmed: 3 8 2022
medline: 4 8 2022
Statut: ppublish

Résumé

Protein crystals grown in microfluidic droplets have been shown to be an effective and robust platform for storage, transport and serial crystallography data collection with a minimal impact on diffraction quality. Single macromolecular microcrystals grown in nanolitre-sized droplets allow the very efficient use of protein samples and can produce large quantities of high-quality samples for data collection. However, there are challenges not only in growing crystals in microfluidic droplets, but also in delivering the droplets into X-ray beams, including the physical arrangement, beamline and timing constraints and ease of use. Here, the crystallization of two human gut microbial hydrolases in microfluidic droplets is described: a sample-transport and data-collection approach that is inexpensive, is convenient, requires small amounts of protein and is forgiving. It is shown that crystals can be grown in 50-500 pl droplets when the crystallization conditions are compatible with the droplet environment. Local and remote data-collection methods are described and it is shown that crystals grown in microfluidics droplets and housed as an emulsion in an Eppendorf tube can be shipped from the US to the UK using a FedEx envelope, and data can be collected successfully. Details of how crystals were delivered to the X-ray beam by depositing an emulsion of droplets onto a silicon fixed-target serial device are provided. After three months of storage at 4°C, the crystals endured and diffracted well, showing only a slight decrease in diffracting power, demonstrating a suitable way to grow crystals, and to store and collect the droplets with crystals for data collection. This sample-delivery and data-collection strategy allows crystal droplets to be shipped and set aside until beamtime is available.

Identifiants

pubmed: 35916224
pii: S2059798322004661
doi: 10.1107/S2059798322004661
pmc: PMC9344473
doi:

Substances chimiques

Emulsions 0
Proteins 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

997-1009

Subventions

Organisme : NIGMS NIH HHS
ID : R24 GM115586
Pays : United States

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Auteurs

Gyorgy Babnigg (G)

Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.

Darren Sherrell (D)

Structural Biology Center, X-ray Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.

Youngchang Kim (Y)

Structural Biology Center, X-ray Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.

Jessica L Johnson (JL)

Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.

Boguslaw Nocek (B)

Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.

Kemin Tan (K)

Structural Biology Center, X-ray Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.

Danny Axford (D)

Harwell Science and Innovation Campus, Diamond Light Source, Fermi Avenue, Didcot OX11 0DE, United Kingdom.

Hui Li (H)

Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.

Lance Bigelow (L)

Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.

Lukas Welk (L)

Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.

Michael Endres (M)

Structural Biology Center, X-ray Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.

Robin L Owen (RL)

Harwell Science and Innovation Campus, Diamond Light Source, Fermi Avenue, Didcot OX11 0DE, United Kingdom.

Andrzej Joachimiak (A)

Structural Biology Center, X-ray Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.

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Classifications MeSH