Fragment Based Drug Discovery ligand-based NMR multi-frequency STD NMR multi-subsite binding pockets protein-ligand interactions saturation transfer difference NMR

Journal

Pharmaceuticals (Basel, Switzerland)
ISSN: 1424-8247
Titre abrégé: Pharmaceuticals (Basel)
Pays: Switzerland
ID NLM: 101238453

Informations de publication

Date de publication:
21 Aug 2022
Historique:
received: 01 06 2022
revised: 12 08 2022
accepted: 19 08 2022
entrez: 26 8 2022
pubmed: 27 8 2022
medline: 27 8 2022
Statut: epublish

Résumé

In recent years, Saturation Transfer Difference NMR (STD NMR) has been proven to be a powerful and versatile ligand-based NMR technique to elucidate crucial aspects in the investigation of protein-ligand complexes. Novel STD NMR approaches relying on "multi-frequency" irradiation have enabled us to even elucidate specific ligand-amino acid interactions and explore the binding of fragments in previously unknown binding subsites. Exploring multi-subsite protein binding pockets is especially important in Fragment Based Drug Discovery (FBDD) to design leads of increased specificity and efficacy. We hereby propose a novel multi-frequency STD NMR approach based on direct irradiation of one of the ligands in a multi-ligand binding process, to probe the vicinity and explore the relative orientation of fragments in adjacent binding sub-sites, which we called

Identifiants

pubmed: 36015178
pii: ph15081030
doi: 10.3390/ph15081030
pmc: PMC9415034
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : Ministerio de Ciencia e Innovación (Spain)
ID : PID2019-109395GB-I00
Organisme : Junta de Andalucía (Proyectos I+D+i)
ID : PY20_01176
Organisme : Ministerio de Economía y Competitividad (Spain)
ID : CTQ2012-31247, CTQ2016-77270-R
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/P010660/1
Pays : United Kingdom

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Auteurs

Serena Monaco (S)

School of Pharmacy, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK.

Jonathan Ramírez-Cárdenas (J)

Instituto de Investigaciones Químicas (CSIC-Universidad de Sevilla), 41092 Seville, Spain.

Ana Teresa Carmona (AT)

Departamento de Química Orgánica, Facultad de Química, Universidad de Sevilla, 41012 Sevilla, Spain.

Inmaculada Robina (I)

Departamento de Química Orgánica, Facultad de Química, Universidad de Sevilla, 41012 Sevilla, Spain.

Jesus Angulo (J)

School of Pharmacy, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK.
Instituto de Investigaciones Químicas (CSIC-Universidad de Sevilla), 41092 Seville, Spain.

Classifications MeSH