Fragment Based Drug Discovery
ligand-based NMR
multi-frequency STD NMR
multi-subsite binding pockets
protein-ligand interactions
saturation transfer difference NMR
Journal
Pharmaceuticals (Basel, Switzerland)
ISSN: 1424-8247
Titre abrégé: Pharmaceuticals (Basel)
Pays: Switzerland
ID NLM: 101238453
Informations de publication
Date de publication:
21 Aug 2022
21 Aug 2022
Historique:
received:
01
06
2022
revised:
12
08
2022
accepted:
19
08
2022
entrez:
26
8
2022
pubmed:
27
8
2022
medline:
27
8
2022
Statut:
epublish
Résumé
In recent years, Saturation Transfer Difference NMR (STD NMR) has been proven to be a powerful and versatile ligand-based NMR technique to elucidate crucial aspects in the investigation of protein-ligand complexes. Novel STD NMR approaches relying on "multi-frequency" irradiation have enabled us to even elucidate specific ligand-amino acid interactions and explore the binding of fragments in previously unknown binding subsites. Exploring multi-subsite protein binding pockets is especially important in Fragment Based Drug Discovery (FBDD) to design leads of increased specificity and efficacy. We hereby propose a novel multi-frequency STD NMR approach based on direct irradiation of one of the ligands in a multi-ligand binding process, to probe the vicinity and explore the relative orientation of fragments in adjacent binding sub-sites, which we called
Identifiants
pubmed: 36015178
pii: ph15081030
doi: 10.3390/ph15081030
pmc: PMC9415034
pii:
doi:
Types de publication
Journal Article
Langues
eng
Subventions
Organisme : Ministerio de Ciencia e Innovación (Spain)
ID : PID2019-109395GB-I00
Organisme : Junta de Andalucía (Proyectos I+D+i)
ID : PY20_01176
Organisme : Ministerio de Economía y Competitividad (Spain)
ID : CTQ2012-31247, CTQ2016-77270-R
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/P010660/1
Pays : United Kingdom
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