Large-scale sequencing identifies multiple genes and rare variants associated with Crohn's disease susceptibility.
Journal
Nature genetics
ISSN: 1546-1718
Titre abrégé: Nat Genet
Pays: United States
ID NLM: 9216904
Informations de publication
Date de publication:
09 2022
09 2022
Historique:
received:
01
07
2021
accepted:
12
07
2022
pubmed:
30
8
2022
medline:
16
9
2022
entrez:
29
8
2022
Statut:
ppublish
Résumé
Genome-wide association studies (GWASs) have identified hundreds of loci associated with Crohn's disease (CD). However, as with all complex diseases, robust identification of the genes dysregulated by noncoding variants typically driving GWAS discoveries has been challenging. Here, to complement GWASs and better define actionable biological targets, we analyzed sequence data from more than 30,000 patients with CD and 80,000 population controls. We directly implicate ten genes in general onset CD for the first time to our knowledge via association to coding variation, four of which lie within established CD GWAS loci. In nine instances, a single coding variant is significantly associated, and in the tenth, ATG4C, we see additionally a significantly increased burden of very rare coding variants in CD cases. In addition to reiterating the central role of innate and adaptive immune cells as well as autophagy in CD pathogenesis, these newly associated genes highlight the emerging role of mesenchymal cells in the development and maintenance of intestinal inflammation.
Identifiants
pubmed: 36038634
doi: 10.1038/s41588-022-01156-2
pii: 10.1038/s41588-022-01156-2
pmc: PMC9700438
mid: NIHMS1828858
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Pagination
1275-1283Subventions
Organisme : NIDDK NIH HHS
ID : P01 DK094779
Pays : United States
Organisme : Wellcome Trust
ID : 206194
Pays : United Kingdom
Organisme : NIDDK NIH HHS
ID : K01 DK114379
Pays : United States
Organisme : Medical Research Council
ID : MR/M00533X/1
Pays : United Kingdom
Organisme : NHGRI NIH HHS
ID : R01 HG010140
Pays : United States
Organisme : Medical Research Council
ID : MR/S036377/1
Pays : United Kingdom
Organisme : NIDDK NIH HHS
ID : P01 DK046763
Pays : United States
Organisme : NHGRI NIH HHS
ID : U54 HG003067
Pays : United States
Organisme : NIDDK NIH HHS
ID : U01 DK062413
Pays : United States
Organisme : Medical Research Council
ID : MC_UU_00008/7
Pays : United Kingdom
Organisme : NHGRI NIH HHS
ID : UM1 HG008895
Pays : United States
Organisme : NIDDK NIH HHS
ID : P30 DK043351
Pays : United States
Organisme : Department of Health
Pays : United Kingdom
Organisme : NIDDK NIH HHS
ID : U01 DK062432
Pays : United States
Organisme : Medical Research Council
ID : MC_UU_12010/7
Pays : United Kingdom
Organisme : NIDDK NIH HHS
ID : R01 DK104844
Pays : United States
Organisme : Wellcome Trust
ID : 108413/A/15/D
Pays : United Kingdom
Organisme : NHGRI NIH HHS
ID : U01 HG009080
Pays : United States
Organisme : NIDDK NIH HHS
ID : K23 DK117054
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK111843
Pays : United States
Organisme : NIA NIH HHS
ID : P30 AG038072
Pays : United States
Organisme : Medical Research Council
ID : MC_PC_MR/S025952/1
Pays : United Kingdom
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : NIDDK NIH HHS
ID : U01 DK062423
Pays : United States
Organisme : NIDDK NIH HHS
ID : U01 DK062420
Pays : United States
Organisme : NIDDK NIH HHS
ID : U01 DK062431
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK087694
Pays : United States
Informations de copyright
© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.
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