CCP4 Cloud for structure determination and project management in macromolecular crystallography.
CCP4
CCP4 Cloud
data management
distributed computing
macromolecular crystallography
project management
Journal
Acta crystallographica. Section D, Structural biology
ISSN: 2059-7983
Titre abrégé: Acta Crystallogr D Struct Biol
Pays: United States
ID NLM: 101676043
Informations de publication
Date de publication:
01 Sep 2022
01 Sep 2022
Historique:
received:
18
05
2022
accepted:
08
08
2022
entrez:
1
9
2022
pubmed:
2
9
2022
medline:
8
9
2022
Statut:
ppublish
Résumé
Nowadays, progress in the determination of three-dimensional macromolecular structures from diffraction images is achieved partly at the cost of increasing data volumes. This is due to the deployment of modern high-speed, high-resolution detectors, the increased complexity and variety of crystallographic software, the use of extensive databases and high-performance computing. This limits what can be accomplished with personal, offline, computing equipment in terms of both productivity and maintainability. There is also an issue of long-term data maintenance and availability of structure-solution projects as the links between experimental observations and the final results deposited in the PDB. In this article, CCP4 Cloud, a new front-end of the CCP4 software suite, is presented which mitigates these effects by providing an online, cloud-based environment for crystallographic computation. CCP4 Cloud was developed for the efficient delivery of computing power, database services and seamless integration with web resources. It provides a rich graphical user interface that allows project sharing and long-term storage for structure-solution projects, and can be linked to data-producing facilities. The system is distributed with the CCP4 software suite version 7.1 and higher, and an online publicly available instance of CCP4 Cloud is provided by CCP4.
Identifiants
pubmed: 36048148
pii: S2059798322007987
doi: 10.1107/S2059798322007987
pmc: PMC9435598
doi:
Substances chimiques
Macromolecular Substances
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1079-1089Subventions
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/L007037/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/S007040/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/S007083/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/S005099/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/S007105/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BBF020384/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UP_A025_1012
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_U105184325
Pays : United Kingdom
Organisme : Röntgen-Ångström Cluster
ID : 349-2013-597
Organisme : Nederlandse Wetenschappelijke Organisatie
ID : TKI 16219
Informations de copyright
open access.
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