Genetic spectrum and characteristics of autosomal optic neuropathy in Korean: Use of next-generation sequencing in suspected hereditary optic atrophy.
OPA1
SOX5
TMEM126A
hereditary optic atrophy
inherited optic neuropathy
Journal
Frontiers in neurology
ISSN: 1664-2295
Titre abrégé: Front Neurol
Pays: Switzerland
ID NLM: 101546899
Informations de publication
Date de publication:
2022
2022
Historique:
received:
26
06
2022
accepted:
29
07
2022
entrez:
8
9
2022
pubmed:
9
9
2022
medline:
9
9
2022
Statut:
epublish
Résumé
To evaluate the clinical characteristics and causative genetic variants in autosomal optic atrophy diagnosed using next-generation sequencing (NGS). A cohort of 57 unrelated families affected with bilateral optic atrophy were recruited from two university-based tertiary referral hospitals from May 2016 to April 2022. Genetic variants were detected using a target enrichment panel consisting of 429 or 595 genes and known deep intronic variants associated with inherited eye diseases, exome sequencing, or genome sequencing. The results of detailed clinical examinations, disease-causing variants, and clinical diagnoses were analyzed. Among the 57 probands, 33 (57.9%) were men, and the median age at genetic testing was 19.1 years (interquartile range, 7.6-42.5 years). We identified 22 likely causative variants in 18 families and corresponding diagnostic yields of 31.6% (95% confidence interval, 21.0-44.5%). The diagnostic rate of NGS was higher in patients with infantile or early childhood onset optic atrophy than in those with late-onset or unknown optic atrophy (18/39, 46.2% vs. 0/18, 0%, Based on the results of diagnostic NGS for optic atrophy, the causative variant could be detected in 31.6% of patients. Our study also demonstrated that NGS is unlikely to help identify molecular causes in late-onset unexplained optic atrophy.
Identifiants
pubmed: 36071901
doi: 10.3389/fneur.2022.978532
pmc: PMC9441910
doi:
Types de publication
Journal Article
Langues
eng
Pagination
978532Informations de copyright
Copyright © 2022 Seo, Kim, Won, Shin, Choi, Lee, Lee, Lim, Han and Han.
Déclaration de conflit d'intérêts
JC and S-TL were employed by Dxome Co., Ltd. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Références
Hum Mutat. 2009 Jul;30(7):E692-705
pubmed: 19319978
Ophthalmology. 2003 Aug;110(8):1639-45
pubmed: 12917186
J Neuroophthalmol. 2022 Mar 24;:
pubmed: 35427297
Otol Neurotol. 2016 Apr;37(4):394-402
pubmed: 26905822
Hum Mutat. 2012 Apr;33(4):728-40
pubmed: 22290657
Eur J Med Genet. 2013 Feb;56(2):108-13
pubmed: 23220431
JAMA Ophthalmol. 2021 Aug 1;139(8):910-911
pubmed: 34110364
Front Neurol. 2021 Mar 25;12:602979
pubmed: 33841295
Ophthalmology. 2005 May;112(5):757-9
pubmed: 15878053
Brain. 2010 Mar;133(Pt 3):771-86
pubmed: 20157015
Proc Natl Acad Sci U S A. 2021 Apr 27;118(17):
pubmed: 33879611
Transl Vis Sci Technol. 2022 Jun 1;11(6):25
pubmed: 35762937
Ophthalmology. 2014 Nov;121(11):2124-37.e1-2
pubmed: 25148791
Ann Neurol. 2019 Sep;86(3):368-383
pubmed: 31298765
Eur J Hum Genet. 2016 May;24(5):660-5
pubmed: 26350515
Transl Vis Sci Technol. 2020 Jul 08;9(8):11
pubmed: 32855858
Eye (Lond). 1997;11 ( Pt 6):882-8
pubmed: 9537152
Prog Retin Eye Res. 2021 Jul;83:100935
pubmed: 33340656
Am J Hum Genet. 2009 Apr;84(4):493-8
pubmed: 19327736
Neurol Genet. 2019 Apr 08;5(3):e329
pubmed: 31119195
PLoS One. 2019 Nov 25;14(11):e0225656
pubmed: 31765440
Am J Med Genet A. 2015 Nov;167A(11):2548-54
pubmed: 26111154
Brain. 2011 Apr;134(Pt 4):e164
pubmed: 20952381
Exp Eye Res. 2009 Oct;89(4):568-74
pubmed: 19523951
J Clin Invest. 2021 Mar 15;131(6):
pubmed: 33465056
Br J Ophthalmol. 2017 Nov;101(11):1505-1509
pubmed: 28314831
Ophthalmic Genet. 2019 Aug;40(4):359-361
pubmed: 31393201
Mol Neurodegener. 2021 Feb 25;16(1):12
pubmed: 33632269
Hum Genome Var. 2019 Jun 18;6:28
pubmed: 31240104
Invest Ophthalmol Vis Sci. 2006 Dec;47(12):5303-9
pubmed: 17122117
Genet Med. 2015 May;17(5):405-24
pubmed: 25741868
Cell Rep. 2021 Apr 20;35(3):109002
pubmed: 33882309
Genet Med. 2013 Jul;15(7):497-506
pubmed: 23429432
Genes (Basel). 2021 Dec 23;13(1):
pubmed: 35052368
Mol Genet Genomics. 2021 Jul;296(4):845-862
pubmed: 33884488
Ophthalmology. 2011 Mar;118(3):558-63
pubmed: 21036400
Proc Natl Acad Sci U S A. 2008 Oct 14;105(41):16021-6
pubmed: 18840685
Am J Hum Genet. 2019 Jan 3;104(1):13-20
pubmed: 30609404
JAMA Ophthalmol. 2017 Dec 1;135(12):1376-1385
pubmed: 29145603
Am J Ophthalmol. 2005 Sep;140(3):517-23
pubmed: 16083845
Ophthalmology. 2021 May;128(5):649-660
pubmed: 33451738