Functional genomics uncovers the transcription factor BNC2 as required for myofibroblastic activation in fibrosis.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
10 09 2022
Historique:
received: 01 12 2021
accepted: 31 08 2022
entrez: 10 9 2022
pubmed: 11 9 2022
medline: 14 9 2022
Statut: epublish

Résumé

Tissue injury triggers activation of mesenchymal lineage cells into wound-repairing myofibroblasts, whose unrestrained activity leads to fibrosis. Although this process is largely controlled at the transcriptional level, whether the main transcription factors involved have all been identified has remained elusive. Here, we report multi-omics analyses unraveling Basonuclin 2 (BNC2) as a myofibroblast identity transcription factor. Using liver fibrosis as a model for in-depth investigations, we first show that BNC2 expression is induced in both mouse and human fibrotic livers from different etiologies and decreases upon human liver fibrosis regression. Importantly, we found that BNC2 transcriptional induction is a specific feature of myofibroblastic activation in fibrotic tissues. Mechanistically, BNC2 expression and activities allow to integrate pro-fibrotic stimuli, including TGFβ and Hippo/YAP1 signaling, towards induction of matrisome genes such as those encoding type I collagen. As a consequence, Bnc2 deficiency blunts collagen deposition in livers of mice fed a fibrogenic diet. Additionally, our work establishes BNC2 as potentially druggable since we identified the thalidomide derivative CC-885 as a BNC2 inhibitor. Altogether, we propose that BNC2 is a transcription factor involved in canonical pathways driving myofibroblastic activation in fibrosis.

Identifiants

pubmed: 36088459
doi: 10.1038/s41467-022-33063-9
pii: 10.1038/s41467-022-33063-9
pmc: PMC9464213
doi:

Substances chimiques

BNC2 protein, human 0
DNA-Binding Proteins 0
Transcription Factors 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

5324

Informations de copyright

© 2022. The Author(s).

Références

Nucleic Acids Res. 2012 Jan;40(Database issue):D918-23
pubmed: 22086951
BMC Bioinformatics. 2020 Oct 7;21(1):443
pubmed: 33028195
Bioinformatics. 2015 Jan 15;31(2):166-9
pubmed: 25260700
Nat Rev Gastroenterol Hepatol. 2021 Mar;18(3):151-166
pubmed: 33128017
Nat Commun. 2020 Apr 21;11(1):1920
pubmed: 32317643
Arch Physiol Biochem. 2012 Jul;118(3):102-11
pubmed: 22594799
Hepatology. 2017 Nov;66(5):1464-1473
pubmed: 28459138
J Mol Med (Berl). 2005 Oct;83(10):795-805
pubmed: 15976918
JCI Insight. 2017 Jul 6;2(13):
pubmed: 28679947
Nat Protoc. 2012 Jul 26;7(8):1551-68
pubmed: 22836136
Ann Surg. 2014 Nov;260(5):893-8; discussion 898-9
pubmed: 25379859
Epigenomics. 2020 Apr;12(8):715-723
pubmed: 32396464
Mol Cell Proteomics. 2012 Apr;11(4):M111.014647
pubmed: 22159717
Genome Res. 2017 Jun;27(6):985-996
pubmed: 28400425
Proteomics. 2021 Dec;21(23-24):e2000034
pubmed: 34314098
Nat Commun. 2013;4:2823
pubmed: 24264436
Cell. 2021 Jul 22;184(15):3852-3872
pubmed: 34297930
Am J Cancer Res. 2015 Dec 15;6(1):27-37
pubmed: 27073720
Sci Rep. 2017 Jun 6;7(1):2851
pubmed: 28588211
Nucleic Acids Res. 2016 Jul 8;44(W1):W160-5
pubmed: 27079975
Nature. 2021 Jan;589(7841):281-286
pubmed: 33176333
Nucleic Acids Res. 2002 Jan 1;30(1):207-10
pubmed: 11752295
Nat Commun. 2017 Dec 20;8(1):2217
pubmed: 29263365
Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14432-7
pubmed: 19706529
Nat Commun. 2020 Jun 1;11(1):2696
pubmed: 32483223
Curr Tissue Microenviron Rep. 2021;2(3):41-52
pubmed: 34337431
Nat Rev Drug Discov. 2021 Sep;20(9):669-688
pubmed: 34006959
Cell. 2012 Sep 14;150(6):1274-86
pubmed: 22959076
Bioinformatics. 2009 Oct 15;25(20):2730-1
pubmed: 19654113
Hepatology. 2021 Mar;73(3):920-936
pubmed: 32394476
N Engl J Med. 2015 Mar 19;372(12):1138-49
pubmed: 25785971
Nucleic Acids Res. 2014;42(17):10943-59
pubmed: 25183525
Nucleic Acids Res. 2018 Jul 2;46(W1):W537-W544
pubmed: 29790989
J Mol Biol. 1997 Apr 4;267(3):727-48
pubmed: 9126849
Am J Hum Genet. 2019 May 2;104(5):994-1006
pubmed: 31051115
Genome Res. 2010 Nov;20(11):1493-502
pubmed: 20841431
Curr Rheumatol Rep. 2018 Jan 19;20(1):2
pubmed: 29349703
Acta Haematol. 2016;136(2):85-97
pubmed: 27188909
BMC Med Genomics. 2019 Jun 3;12(1):80
pubmed: 31159817
Nucleic Acids Res. 2020 Jan 8;48(D1):D87-D92
pubmed: 31701148
Genes Dev. 2019 Nov 1;33(21-22):1491-1505
pubmed: 31558567
Sci Rep. 2019 Feb 20;9(1):2324
pubmed: 30787418
Dev Cell. 2019 May 6;49(3):361-374
pubmed: 31063755
Nucleic Acids Res. 2015 Apr 20;43(7):e47
pubmed: 25605792
Am J Hum Genet. 2015 Aug 6;97(2):337-42
pubmed: 26211971
Clin Epigenetics. 2021 Jul 8;13(1):138
pubmed: 34238359
Cell. 2021 Jun 24;184(13):3573-3587.e29
pubmed: 34062119
Nat Med. 2011 May;17(5):552-3
pubmed: 21546973
Sci Rep. 2020 Dec 3;10(1):21095
pubmed: 33273527
J Clin Invest. 2018 May 1;128(5):2127-2143
pubmed: 29664017
Gastroenterology. 2007 May;132(5):1937-46
pubmed: 17484886
PLoS One. 2015 Jun 05;10(6):e0129241
pubmed: 26046848
Cell. 2013 Nov 7;155(4):934-47
pubmed: 24119843
Epigenetics Chromatin. 2020 Jul 1;13(1):27
pubmed: 32611439
Nucleic Acids Res. 2018 Jan 4;46(D1):D794-D801
pubmed: 29126249
EMBO J. 2019 Jul 1;38(13):e100532
pubmed: 31268606
Nucleic Acids Res. 2019 Jan 8;47(D1):D33-D38
pubmed: 30204897
Hepatology. 2020 Dec;72(6):2119-2133
pubmed: 32145072
Nucleic Acids Res. 2019 Jan 8;47(D1):D752-D758
pubmed: 30407557
Am J Physiol Lung Cell Mol Physiol. 2018 Jan 1;314(1):L177-L191
pubmed: 28971975
J Hepatol. 2015 Sep;63(3):679-88
pubmed: 25908270
Genome Biol. 2018 May 1;19(1):56
pubmed: 29716618
Nat Methods. 2013 Aug;10(8):730-6
pubmed: 23921808
Nature. 2015 Feb 19;518(7539):317-30
pubmed: 25693563
Nature. 2020 Nov;587(7835):555-566
pubmed: 33239795
Cancer Res. 2019 Feb 1;79(3):467-481
pubmed: 30487138
Front Med (Lausanne). 2015 Sep 03;2:59
pubmed: 26389119
Dev Growth Differ. 2005 Apr;47(3):163-72
pubmed: 15840001
PLoS Genet. 2015 Aug 21;11(8):e1005465
pubmed: 26295846
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
Gastroenterology. 2015 Aug;149(2):398-406.e8; quiz e16-7
pubmed: 25935634
Nat Genet. 2015 Oct;47(10):1149-57
pubmed: 26301496
Cell. 2013 Apr 11;153(2):307-19
pubmed: 23582322
Cell. 2022 Jan 20;185(2):379-396.e38
pubmed: 35021063
Hepatology. 2009 Mar;49(3):960-8
pubmed: 19085953
Genome Res. 2022 Jul;32(7):1328-1342
pubmed: 34162697
Nucleic Acids Res. 2018 Jan 4;46(D1):D252-D259
pubmed: 29140464
Bioinformatics. 2010 Jan 1;26(1):139-40
pubmed: 19910308
J Hepatol. 2018 Nov;69(5):1099-1109
pubmed: 29981427
Nat Rev Rheumatol. 2019 Dec;15(12):705-730
pubmed: 31712723
Proc Natl Acad Sci U S A. 2015 Dec 22;112(51):15713-8
pubmed: 26644586
Curr Rheumatol Rep. 2020 Jun 19;22(8):33
pubmed: 32562113
Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50
pubmed: 16199517
Nat Metab. 2019 Jun;1(6):604-614
pubmed: 31701087
Genome Biol. 2008;9(9):R137
pubmed: 18798982
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
J Cell Sci. 2020 Jul 10;133(13):
pubmed: 32651236
Nat Protoc. 2016 Feb;11(2):316-26
pubmed: 26797456
Nucleic Acids Res. 2019 Jan 8;47(D1):D607-D613
pubmed: 30476243
Gastroenterology. 2020 Oct;159(4):1290-1301.e5
pubmed: 32553765
Nature. 2015 Jul 9;523(7559):183-188
pubmed: 26131937
Cell. 2013 Apr 25;153(3):601-13
pubmed: 23622244
J Hepatol. 2021 Oct;75(4):912-923
pubmed: 34129887
Nucleic Acids Res. 2019 Jan 8;47(D1):D729-D735
pubmed: 30462313
Sci Rep. 2020 Nov 16;10(1):19835
pubmed: 33199699
Sci Rep. 2019 Jun 27;9(1):9354
pubmed: 31249361
Nucleic Acids Res. 2019 Jan 8;47(D1):D766-D773
pubmed: 30357393
Genome Res. 2019 Dec;29(12):2034-2045
pubmed: 31754022
Nat Biotechnol. 2010 May;28(5):495-501
pubmed: 20436461
Nat Protoc. 2015 Feb;10(2):305-15
pubmed: 25612230
Proc Natl Acad Sci U S A. 2014 Aug 12;111(32):E3297-305
pubmed: 25074909
Annu Rev Physiol. 2016;78:181-205
pubmed: 26667070
Science. 2015 Jul 3;349(6243):18-20
pubmed: 26138960
Genome Biol. 2013 Apr 25;14(4):R36
pubmed: 23618408
Genome Med. 2016 Mar 23;8(1):31
pubmed: 27007663
Am J Physiol Gastrointest Liver Physiol. 2013 Oct 1;305(7):G483-95
pubmed: 23886860
Nat Commun. 2019 Apr 3;10(1):1523
pubmed: 30944313
Mol Syst Biol. 2020 May;16(5):e9156
pubmed: 32407006
Nat Rev Genet. 2016 Dec;17(12):744-757
pubmed: 27818507
Nucleic Acids Res. 2015 Jan;43(Database issue):D76-81
pubmed: 25262351
Nucleic Acids Res. 2020 Jan 8;48(D1):D1136-D1144
pubmed: 31586405
Science. 2018 Nov 2;362(6414):
pubmed: 30385546
Am J Respir Crit Care Med. 2019 Jun 15;199(12):1517-1536
pubmed: 30554520
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W305-11
pubmed: 19465376
J Clin Invest. 2018 Jan 2;128(1):45-53
pubmed: 29293088

Auteurs

Marie Bobowski-Gerard (M)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Clémence Boulet (C)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Francesco P Zummo (FP)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Julie Dubois-Chevalier (J)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Céline Gheeraert (C)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Mohamed Bou Saleh (M)

Univ. Lille, Inserm, CHU Lille, U1286 - INFINITE - Institute for Translational Research in Inflammation, F-59000, Lille, France.

Jean-Marc Strub (JM)

Laboratoire de Spectrométrie de Masse BioOrganique, CNRS UMR7178, Univ Strasbourg, IPHC, Infrastructure Nationale de Protéomique ProFI - FR2048, 67087, Strasbourg, France.

Amaury Farce (A)

Univ. Lille, Inserm, CHU Lille, U1286 - INFINITE - Institute for Translational Research in Inflammation, F-59000, Lille, France.

Maheul Ploton (M)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Loïc Guille (L)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Jimmy Vandel (J)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Antonino Bongiovanni (A)

Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, US 41 - UAR 2014 - PLBS, F-59000, Lille, France.

Ninon Very (N)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Eloïse Woitrain (E)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Audrey Deprince (A)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Fanny Lalloyer (F)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Eric Bauge (E)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Lise Ferri (L)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Line-Carolle Ntandja-Wandji (LC)

Univ. Lille, Inserm, CHU Lille, U1286 - INFINITE - Institute for Translational Research in Inflammation, F-59000, Lille, France.

Alexia K Cotte (AK)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Corinne Grangette (C)

U1019-UMR 9017-CIIL-Centre d'Infection et d'Immunité de Lille, Institut Pasteur de Lille, Université de Lille, CNRS, Inserm, CHU Lille, F-59000, Lille, France.

Emmanuelle Vallez (E)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Sarah Cianférani (S)

Laboratoire de Spectrométrie de Masse BioOrganique, CNRS UMR7178, Univ Strasbourg, IPHC, Infrastructure Nationale de Protéomique ProFI - FR2048, 67087, Strasbourg, France.

Violeta Raverdy (V)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1190-EGID, Translational Research in Diabetes, Lille, France.

Robert Caiazzo (R)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1190-EGID, Translational Research in Diabetes, Lille, France.

Viviane Gnemmi (V)

Service d'anatomopathologie, Centre Hospitalier Universitaire de Lille, Université de Lille, INSERM UMR-S 1172, Lille, France.

Emmanuelle Leteurtre (E)

Service d'anatomopathologie, Centre Hospitalier Universitaire de Lille, Université de Lille, INSERM UMR-S 1172, Lille, France.

Benoit Pourcet (B)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Réjane Paumelle (R)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Kim Ravnskjaer (K)

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, 5230, Denmark.
Center for Functional Genomics and Tissue Plasticity (ATLAS), University of Southern Denmark, Odense, 5230, Denmark.

Guillaume Lassailly (G)

Univ. Lille, Inserm, CHU Lille, U1286 - INFINITE - Institute for Translational Research in Inflammation, F-59000, Lille, France.

Joel T Haas (JT)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Philippe Mathurin (P)

Univ. Lille, Inserm, CHU Lille, U1286 - INFINITE - Institute for Translational Research in Inflammation, F-59000, Lille, France.

François Pattou (F)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1190-EGID, Translational Research in Diabetes, Lille, France.

Laurent Dubuquoy (L)

Univ. Lille, Inserm, CHU Lille, U1286 - INFINITE - Institute for Translational Research in Inflammation, F-59000, Lille, France.

Bart Staels (B)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Philippe Lefebvre (P)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France.

Jérôme Eeckhoute (J)

Univ. Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000, Lille, France. jerome.eeckhoute@inserm.fr.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH