Statistical Classification for Raman Spectra of Tumoral Genomic DNA.

Raman spectroscopy classification logistic regression minimum distance classifiers principal component analysis tumoral genomic DNA

Journal

Micromachines
ISSN: 2072-666X
Titre abrégé: Micromachines (Basel)
Pays: Switzerland
ID NLM: 101640903

Informations de publication

Date de publication:
25 Aug 2022
Historique:
received: 22 07 2022
revised: 17 08 2022
accepted: 23 08 2022
entrez: 23 9 2022
pubmed: 24 9 2022
medline: 24 9 2022
Statut: epublish

Résumé

We exploit Surface-Enhanced Raman Scattering (SERS) to investigate aqueous droplets of genomic DNA deposited onto silver-coated silicon nanowires, and we show that it is possible to efficiently discriminate between spectra of tumoral and healthy cells. To assess the robustness of the proposed technique, we develop two different statistical approaches, one based on the Principal Components Analysis of spectral data and one based on the computation of the ℓ2 distance between spectra. Both methods prove to be highly efficient, and we test their accuracy via the Cohen's κ statistics. We show that the synergistic combination of the SERS spectroscopy and the statistical analysis methods leads to efficient and fast cancer diagnostic applications allowing rapid and unexpansive discrimination between healthy and tumoral genomic DNA alternative to the more complex and expensive DNA sequencing.

Identifiants

pubmed: 36144012
pii: mi13091388
doi: 10.3390/mi13091388
pmc: PMC9503739
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : Regione Lazio
ID : A0375-2020-36589
Organisme : MAECI
ID : US19GR07

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Auteurs

Claudio Durastanti (C)

Dipartimento di Scienze di Base e Applicate per l'Ingegneria, Sapienza Università di Roma, Via A. Scarpa 16, 00161 Roma, Italy.

Emilio N M Cirillo (ENM)

Dipartimento di Scienze di Base e Applicate per l'Ingegneria, Sapienza Università di Roma, Via A. Scarpa 16, 00161 Roma, Italy.

Ilaria De Benedictis (I)

Dipartimento di Scienze di Base e Applicate per l'Ingegneria, Sapienza Università di Roma, Via A. Scarpa 16, 00161 Roma, Italy.

Mario Ledda (M)

Institute of Translational Pharmacology, CNR, Via del Fosso del Cavaliere, 00133 Roma, Italy.

Antonio Sciortino (A)

Institute for Microelectronics and Microsystems, CNR, Via del Fosso del Cavaliere, 00133 Roma, Italy.

Antonella Lisi (A)

Institute of Translational Pharmacology, CNR, Via del Fosso del Cavaliere, 00133 Roma, Italy.

Annalisa Convertino (A)

Institute for Microelectronics and Microsystems, CNR, Via del Fosso del Cavaliere, 00133 Roma, Italy.

Valentina Mussi (V)

Institute for Microelectronics and Microsystems, CNR, Via del Fosso del Cavaliere, 00133 Roma, Italy.

Classifications MeSH