Microbial volatile organic compounds 2-heptanol and acetoin control Fusarium crown and root rot of tomato.
2-heptanol
Fusarium oxysporum f. sp. radicis-lycopersici
acetoin
biological control of diseases
cheminformatics and bioinformatics
target protein
Journal
Journal of cellular physiology
ISSN: 1097-4652
Titre abrégé: J Cell Physiol
Pays: United States
ID NLM: 0050222
Informations de publication
Date de publication:
02 Oct 2022
02 Oct 2022
Historique:
revised:
15
09
2022
received:
13
07
2022
accepted:
16
09
2022
entrez:
2
10
2022
pubmed:
3
10
2022
medline:
3
10
2022
Statut:
aheadofprint
Résumé
Some microbial volatile organic compounds (mVOCs) can act as antagonistic weapons against plant pathogens, but little information is available on the contribution of individual mVOC to biocontrol and how they interact with plant pathogens. In this study, the Bacillus subtilis strain N-18 isolated from the rhizosphere of healthy plants grown in areas where Fusarium crown and root rot (FCRR) of tomato occurs could reduce the 30% of the incidence of FCRR. Moreover, the volatile organic compounds (VOCs) produced by N-18 had inhibitory effects on Fusarium oxysporum f. sp. radicis-lycopersici (FORL). The identification of VOCs of N-18 was analyzed by the solid-phase microextraction coupled to gas chromatography-mass spectrometry. Meanwhile, we conducted sensitivity tests with these potential active ingredients and found that the volatile substances acetoin and 2-heptanol can reduce the 41.33% and 35% of the incidence of FCRR in tomato plants. In addition, the potential target protein of acetoin, found in the cheminformatics and bioinformatics database, was F. oxysporum of hypothetical protein AU210_012600 (FUSOX). Molecular docking results further predicted that acetoin interacts with FUSOX protein. These results reveal the VOCs of N-18 and their active ingredients in response to FORL and provide a basis for further research on regulating and controlling FCRR.
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : National Natural Science Foundation of China
ID : 32072500
Organisme : National Natural Science Foundation of China
ID : 31872925
Organisme : National Natural Science Foundation of China
ID : 31801845
Organisme : Science and Technology Support Plan for Youth Innovation of Colleges and Universities of Shandong Province
ID : 2019KJF023
Organisme : Shandong Province Key Research and Development Plan
ID : 2020CXGC010803
Organisme : Shandong Province Key Research and Development Plan
ID : 2021TZXD007-04-4
Organisme : Shandong Natural Science Foundation Youth Project
ID : ZR2020QC130
Informations de copyright
© 2022 Wiley Periodicals LLC.
Références
Bais, H. P., Weir, T. L., Perry, L. G., Gilroy, S., & Vivanco, J. M. (2006). The role of root exudates in rhizosphere interactions with plants and other organisms. Annual Review of Plant Biology, 57, 233-266. https://doi.org/10.1146/annurev.arplant.57.032905.105159
Bitas, V., Kim, H. S., Bennett, J. W., & Kang, S. (2013). Sniffing on microbes: Diverse roles of microbial volatile organic compounds in plant health. Molecular Plant-Microbe Interactions®, 26, 835-843. https://doi.org/10.1094/MPMI-10-12-0249-CR
Bulgarelli, D., Rott, M., Schlaeppi, K., Ver Loren van Themaat, E., Ahmadinejad, N., Assenza, F., Rauf, P., Huettel, B., Reinhardt, R., Schmelzer, E., Peplies, J., Gloeckner, F. O., Amann, R., Eickhorst, T., & Schulze-Lefert, P. (2012). Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota. Nature, 488, 91-95. https://doi.org/10.1038/nature11336
Cellini, A., Spinelli, F., Donati, I., Ryu, C.-M., & Kloepper, J. W. (2021). Bacterial volatile compound-based tools for crop management and quality. Trends in Plant Science, 26, 968-983. https://doi.org/10.1016/j.tplants.2021.05.006
Chen, Y., Du, J., Li, Y., Tang, H., Yin, Z., Yang, L., & Ding, X. (2022). Evolutions and managements of soil microbial community structure drove by continuous cropping. Frontiers in Microbiology, 13, 839494. https://doi.org/10.3389/fmicb.2022.839494
Cui, L., Yang, C., Wei, L., Li, T., & Chen, X. (2020). Isolation and identification of an endophytic bacteria Bacillus velezensis 8-4 exhibiting biocontrol activity against potato scab. Biological Control, 141, 104156. https://doi.org/10.1016/j.biocontrol.2019.104156
Cui, Z., Wang, Z., Zheng, M., & Chen, T. (2021). Advances in biological production of acetoin: A comprehensive overview. Critical Reviews in Biotechnology, 21, 1-22. https://doi.org/10.1080/07388551.2021.1995319
Domínguez, M., Dugas, E., Benchouaia, M., Leduque, B., Jiménez-Gómez, J. M., Colot, V., & Quadrana, L. (2020). The impact of transposable elements on tomato diversity. Nature Communications, 11, 4058. https://doi.org/10.1038/s41467-020-17874-2
Du, J., Gao, Q., Ji, C., Song, X., Liu, Y., Li, H., Li, C., Zhang, P., Li, J., & Liu, X. (2022). Bacillus licheniformis JF-22 to control meloidogyne incognita and its effect on tomato rhizosphere microbial community. Frontiers in Microbiology, 13, 863341. https://doi.org/10.3389/fmicb.2022.863341
Du, J., Li, Y., Ur-Rehman, S., Mukhtar, I., Yin, Z., Dong, H., Wang, H., Zhang, X., Gao, Z., Zhao, X., Xin, X., & Ding, X. (2021). Synergistically promoting plant health by harnessing synthetic microbial communities and prebiotics. iScience, 24, 102918. https://doi.org/10.1016/j.isci.2021.102918
Durand-Reville, T. F., Miller, A. A., O'donnell, J. P., Wu, X., Sylvester, M. A., Guler, S., Iyer, R., Shapiro, A. B., Carter, N. M., Velez-Vega, C., Moussa, S. H., McLeod, S. M., Chen, A., Tanudra, A. M., Zhang, J., Comita-Prevoir, J., Romero, J. A., Huynh, H., Ferguson, A. D., … Tommasi, R. A. (2021). Rational design of a new antibiotic class for drug-resistant infections. Nature, 597, 698-702. https://doi.org/10.1038/s41586-021-03899-0
Jaiswal, A. K., Alkan, N., Elad, Y., Sela, N., Philosoph, A. M., Graber, E. R., & Frenkel, O. (2020). Molecular insights into biochar-mediated plant growth promotion and systemic resistance in tomato against Fusarium crown and root rot disease. Scientific Reports, 10, 13934. https://doi.org/10.1038/s41598-020-70882-6
Janssens, T. K. S., Tyc, O., Besselink, H., De Boer, W., & Garbeva, P. (2019). Biological activities associated with the volatile compound 2,5-bis(1-methylethyl)-pyrazine. FEMS Microbiology Letters, 366, fnz023. https://doi.org/10.1093/femsle/fnz023
Jeschke, P. (2016). Progress of modern agricultural chemistry and future prospects. Pest Management Science, 72, 433-455. https://doi.org/10.1002/ps.4190
Laskowski, R. A., Macarthur, M. W., Moss, D. S., & Thornton, J. M. (1993). PROCHECK: A program to check the stereochemical quality of protein structures. Journal of Applied Crystallography, 26, 283-291. https://doi.org/10.1107/S0021889892009944
Le, C. N., Hoang, T. K., Thai, T. H., Tran, T. L., Phan, T. P. N., & Raaijmakers, J. M. (2018). Isolation, characterization and comparative analysis of plant-associated bacteria for suppression of soil-borne diseases of field-grown groundnut in Vietnam. Biological Control, 121, 256-262. https://doi.org/10.1016/j.biocontrol.2018.03.014
Luo, J., Zhang, D., Jing, T., Liu, G., Cao, H., Li, B., Hou, Y., & Liu, F. (2020). Pyraclostrobin loaded lignin-modified nanocapsules: Delivery efficiency enhancement in soil improved control efficacy on tomato Fusarium crown and root rot. Chemical Engineering Journal, 394, 124854. https://doi.org/10.1016/j.cej.2020.124854
Martins, S. J., Faria, A. F., Pedroso, M. P., Cunha, M. G., Rocha, M. R., & Medeiros, F. H. V. (2019). Microbial volatiles organic compounds control anthracnose (Colletotrichum lindemuthianum) in common bean (Phaseolus vulgaris L.). Biological Control, 131, 36-42. https://doi.org/10.1016/j.biocontrol.2019.01.003
Meng, X. Y., Zhang, H. X., Mezei, M., & Cui, M. (2011). Molecular docking: A powerful approach for structure-based drug discovery. Current Computer Aided-Drug Design, 7, 146-157. https://doi.org/10.2174/157340911795677602
Morris, G. M., Huey, R., Lindstrom, W., Sanner, M. F., Belew, R. K., Goodsell, D. S., & Olson, A. J. (2009). AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. Journal of Computational Chemistry, 30, 2785-2791. https://doi.org/10.1002/jcc.21256
Nefzi, A., Abdallah, R. A. B., Jabnoun-Khiareddine, H., Ammar, N., & Daami-Remadi, M. (2019). Ability of endophytic fungi associated with Withania somnifera L. to control Fusarium crown and root rot and to promote growth in tomato. Brazilian Journal of Microbiology, 50, 481-494. https://doi.org/10.1007/s42770-019-00062-w
Netzker, T., Shepherdson, E. M. F., Zambri, M. P., & Elliot, M. A. (2020). Bacterial volatile compounds: Functions in communication, cooperation, and competition. Annual Review of Microbiology, 74, 409-430. https://doi.org/10.1146/annurev-micro-011320-015542
Pharand, B., Carisse, O., & Benhamou, N. (2002). Cytological aspects of compost-mediated induced resistance against Fusarium crown and root rot in tomato. Phytopathology®, 92, 424-438. https://doi.org/10.1094/PHYTO.2002.92.4.424
Plyuta, V., Lipasova, V., Popova, A., Koksharova, O., Kuznetsov, A., Szegedi, E., Chernin, L., & Khmel, I. (2016). Influence of volatile organic compounds emitted by Pseudomonas and Serratia strains on Agrobacterium tumefaciens biofilms. APMIS, 124, 586-594. https://doi.org/10.1111/apm.12547
Qin, X., Xiao, H., Cheng, X., Zhou, H., & Si, L. (2017). Hanseniaspora uvarum prolongs shelf life of strawberry via volatile production. Food Microbiology, 63, 205-212. https://doi.org/10.1016/j.fm.2016.11.005
Rane, N. R., Tapase, S., Kanojia, A., Watharkar, A., Salama, E. S., Jang, M., Kumar Yadav, K., Amin, M. A., Cabral-Pinto, M. M. S., Jadhav, J. P., & Jeon, B. H. (2022). Molecular insights into plant-microbe interactions for sustainable remediation of contaminated environment. Bioresource Technology, 344, 126246. https://doi.org/10.1016/j.biortech.2021.126246
Raza, W., Wang, J., Jousset, A., Friman, V. P., Mei, X., Wang, S., Wei, Z., & Shen, Q. (2020). Bacterial community richness shifts the balance between volatile organic compound-mediated microbe-pathogen and microbe-plant interactions. Proceedings of the Royal Society B: Biological Sciences, 287, 20200403. https://doi.org/10.1098/rspb.2020.0403
Rubio-Pérez, E., Molinero-Ruiz, M. L., Melero-Vara, J. M., & Basallote-Ureba, M. J. (2008). Selection of potential antagonists against asparagus crown and root rot caused by fusarium spp. Communications in agricultural and applied biological sciences, 73, 203-206.
Sanner, M. F. (1999). Python: A programming language for software integration and development. Journal of Molecular Graphics & Modelling, 17, 57-61.
Sato, I., Yoshida, S., Iwamoto, Y., Aino, M., Hyakumachi, M., Shimizu, M., Takahashi, H., Ando, S., & Tsushima, S. (2014). Suppressive potential of Paenibacillus strains isolated from the tomato phyllosphere against Fusarium crown and root rot of tomato. Microbes and Environments, 29, 168-177. https://doi.org/10.1264/jsme2.ME13172
Sharifi, R., & Ryu, C.-M. (2018). Sniffing bacterial volatile compounds for healthier plants. Current Opinion in Plant Biology, 44, 88-97. https://doi.org/10.1016/j.pbi.2018.03.004
Stewart, J. J. P. (1991). Optimization of parameters for semiempirical methods. III extension of PM3 to Be, Mg, Zn, Ga, Ge, As, Se, Cd, In, Sn, Sb, Te, Hg, Tl, Pb, and Bi. Journal of Computational Chemistry, 12, 320-341. https://doi.org/10.1002/jcc.540120306
Tao, X., Huang, Y., Wang, C., et al (2020). Recent developments in molecular docking technology applied in food science: A review. International Journal of Food Science & Technology, 55, 33-45.
Tudi, M., Daniel Ruan, H., Wang, L., Lyu, J., Sadler, R., Connell, D., Chu, C., & Phung, D. T. (2021). Agriculture development, pesticide application and its impact on the environment. International Journal of Environmental Research and Public Health, 18, 1112. https://doi.org/10.3390/ijerph18031112
Vidal-Limon, A., Aguilar-Toalá, J. E., & Liceaga, A. M. (2022). Integration of molecular docking analysis and molecular dynamics simulations for studying food proteins and bioactive peptides. Journal of Agricultural and Food Chemistry, 70, 934-943. https://doi.org/10.1021/acs.jafc.1c06110
Waterhouse, A., Bertoni, M., Bienert, S., Studer, G., Tauriello, G., Gumienny, R., Heer, F. T., de Beer, T. A. P., Rempfer, C., Bordoli, L., Lepore, R., & Schwede, T. (2018). SWISS-MODEL: Homology modelling of protein structures and complexes. Nucleic Acids Research, 46, W296-W303. https://doi.org/10.1093/nar/gky427
Wu, T., Zhang, H., Yuan, B., Liu, H., Kong, L., Chu, Z., & Ding, X. (2022). Tal2b targets and activates the expression of OsF3H(03g) to hijack OsUGT74H4 and synergistically interfere with rice immunity. New Phytologist, 233, 1864-1880. https://doi.org/10.1111/nph.17877
Yang, K., Zeng, L., Ge, A., Cao, C., Zhang, H., Bao, T., Yi, Y., & Ge, J. (2021). Systems biology and chemoinformatics-based strategies to explore the biological mechanism of fugui wenyang decoction in treating vascular dementia rats. Oxidative Medicine and Cellular Longevity, 2021, 1-42. https://doi.org/10.1155/2021/6693955