Blueprint for harmonising unstandardised disease registries to allow federated data analysis: prepare for the future.


Journal

ERJ open research
ISSN: 2312-0541
Titre abrégé: ERJ Open Res
Pays: England
ID NLM: 101671641

Informations de publication

Date de publication:
Oct 2022
Historique:
received: 04 04 2022
accepted: 29 06 2022
entrez: 6 10 2022
pubmed: 7 10 2022
medline: 7 10 2022
Statut: epublish

Résumé

Real-world evidence from multinational disease registries is becoming increasingly important not only for confirming the results of randomised controlled trials, but also for identifying phenotypes, monitoring disease progression, predicting response to new drugs and early detection of rare side-effects. With new open-access technologies, it has become feasible to harmonise patient data from different disease registries and use it for data analysis without compromising privacy rules. Here, we provide a blueprint for how a clinical research collaboration can successfully use real-world data from existing disease registries to perform federated analyses. We describe how the European severe asthma clinical research collaboration SHARP (Severe Heterogeneous Asthma Research collaboration, Patient-centred) fulfilled the harmonisation process from nonstandardised clinical registry data to the Observational Medical Outcomes Partnership Common Data Model and built a strong network of collaborators from multiple disciplines and countries. The blueprint covers organisational, financial, conceptual, technical, analytical and research aspects, and discusses both the challenges and the lessons learned. All in all, setting up a federated data network is a complex process that requires thorough preparation, but above all, it is a worthwhile investment for all clinical research collaborations, especially in view of the emerging applications of artificial intelligence and federated learning.

Identifiants

pubmed: 36199590
doi: 10.1183/23120541.00168-2022
pii: 00168-2022
pmc: PMC9530887
pii:
doi:

Types de publication

Journal Article Review

Langues

eng

Informations de copyright

Copyright ©The authors 2022.

Déclaration de conflit d'intérêts

Conflict of interest: J.A. Kroes reports grants from AstraZeneca BV outside the submitted work. A.T. Bansal has nothing to disclose. E. Berret is an employee of the European Respiratory Society. N. Christian is an employee of ITTM SA. A. Kremer is an employee of ITTM SA. A. Alloni is an employee of ITTM SA. M. Gabetta is an employee of Biomeris SRL. C. Marshall has nothing to disclose. S. Wagers reports personal fees from King's College Hospital NHS Foundation Trust, Academic Medical Research, AMC Medical Research BV, Asthma UK, Athens Medical School, Boehringer Ingelheim International GmbH, CHU de Toulouse, CIRO, DS Biologicals Ltd, École Polytechnique Fédérale de Lausanne, European Respiratory Society, FISEVI, Fluidic Analytics Ltd, Fraunhofer IGB, Fraunhofer ITEM, GlaxoSmithKline R&D Ltd, Holland & Knight, Karolinska Institutet Fakturor, KU Leuven, Longfonds, National Heart and Lung Institute, Novartis Pharma AG, Owlstone Medical Ltd, PExA AB, UCB Biopharma SPRL, Umeå University, University Hospital Southampton NHS Foundation Trust, Università Campus Bio-Medico di Roma, Universita Cattolica del Sacro Cuore, Universität Ulm, University of Bern, University of Edinburgh, University of Hull, University of Leicester, University of Loughborough, University of Manchester, University of Nottingham, Vlaams Brabant, Dienst Europa, Imperial College London, Boehringer Ingelheim, Breathomix, Gossamer Bio, AstraZeneca, CIBER, OncoRadiomics, University of Leiden, University of Wurzburg, Chiesi Pharmaceutical, University of Liege, Teva Pharmaceuticals, Sanofi, Pulmonary Fibrosis Foundation and Three Lakes Foundation, outside the submitted work. R. Djukanovic has received a grant from Novartis for a CI-led project that the funder agreed to support without any restrictions or influence on its contents, analysis or publication; has received consultancy fees from Teva Pharmaceuticals, Sanofi, Boehringer, Novartis and Synairgen; has received grants paid to his institution from the IMI-funded EU project U-BIOPRED, the MERC-funded RASP-UK project, the EME/MRC-funded BEAT Severe Asthma project and NIHR BRC; payment for lectures on the mechanisms of action of Xolair from Novartis and mechanisms of asthma from Teva; and has stock in a University of Southampton company, Synairgen. C. Porsbjerg has received grants and consulting fees paid to her institution, and personal honoraria from AstraZeneca, GlaxoSmithKline, Novartis, Teva, Sanofi, Chiesi and ALK. D. Hamerlijnck has nothing to disclose. O. Fulton has nothing to disclose. A. ten Brinke has received grants paid to her institution from AstraZeneca, GlaxoSmithKline and Teva; and fees paid to her institution for advisory boards and lectures from AstraZeneca, GlaxoSmithKline, Novartis, Teva and Sanofi/Genzyme, all outside the submitted work. E.H. Bel has received grants paid to her institution from GlaxoSmithKline and Teva; and consulting fees from AstraZeneca UK Ltd, GlaxoSmithKline Services UnLtd, Sterna Biologicals, Chiesi Pharmaceuticals, Sanofi/Regeneron and Teva Pharmaceuticals. J.K. Sont has received a grant from GlaxoSmithKline, outside the submitted work.

Références

ERJ Open Res. 2021 Apr 19;7(2):
pubmed: 33898615
Knee Surg Sports Traumatol Arthrosc. 2022 Sep;30(9):3068-3075
pubmed: 34870731
Ann Intern Med. 2019 Mar 5;170(5):335-337
pubmed: 30776801
Transl Psychiatry. 2021 Dec 20;11(1):642
pubmed: 34930903
Allergy. 2021 Mar;76(3):887-892
pubmed: 32738147
Drugs. 2019 Aug;79(12):1321-1335
pubmed: 31317509
N Engl J Med. 2004 May 20;350(21):2167-79
pubmed: 15152062
Thorax. 2021 Mar;76(3):220-227
pubmed: 33298582
Nat Rev Rheumatol. 2015 May;11(5):276-89
pubmed: 25687177
N Engl J Med. 2016 Dec 8;375(23):2293-2297
pubmed: 27959688
J Clin Med. 2021 May 10;10(9):
pubmed: 34068814
J Allergy Clin Immunol Pract. 2021 Mar;9(3):1194-1200
pubmed: 33069885
Epidemiol Health. 2021;43:e2021097
pubmed: 34773936
J Biomed Inform. 2016 Dec;64:333-341
pubmed: 27989817
BMC Med Inform Decis Mak. 2021 Aug 12;21(1):242
pubmed: 34384406
Int J Obes (Lond). 2021 Nov;45(11):2347-2357
pubmed: 34267326
N Engl J Med. 2017 Sep 7;377(10):965-976
pubmed: 28877019
Rheumatology (Oxford). 2021 Oct 9;60(SI):SI37-SI50
pubmed: 33725121
JAMA Netw Open. 2019 Oct 2;2(10):e1912869
pubmed: 31596493
Injury. 2022 Feb 1;:
pubmed: 35135685
Stud Health Technol Inform. 2021 Sep 21;283:95-103
pubmed: 34545824
Lancet Rheumatol. 2020 Nov;2(11):e698-e711
pubmed: 32864627
NPJ Digit Med. 2021 Sep 7;4(1):132
pubmed: 34493770
N Engl J Med. 2011 Nov 3;365(18):1713-25
pubmed: 22047562
Future Healthc J. 2019 Jun;6(2):94-98
pubmed: 31363513
Eur Respir J. 2018 Nov 29;52(5):
pubmed: 30498052
Eur Respir J. 2020 Jan 9;55(1):
pubmed: 31601713
BMC Med Res Methodol. 2021 Nov 2;21(1):238
pubmed: 34727871
Biomed Res Int. 2018 Nov 21;2018:1495039
pubmed: 30584531
BMJ. 2021 May 11;373:n1038
pubmed: 33975825
Am J Respir Crit Care Med. 2021 Apr 1;203(7):809-821
pubmed: 33326352
J Allergy Clin Immunol Pract. 2022 Feb;10(2):467-477
pubmed: 34563736
J Allergy Clin Immunol Pract. 2022 Feb;10(2):410-419
pubmed: 34958982
BMJ Open. 2021 Dec 22;11(12):e057632
pubmed: 34937726

Auteurs

Johannes A Kroes (JA)

Dept of Clinical Pharmacy and Pharmacology, Medical Centre Leeuwarden, Leeuwarden, The Netherlands.

Aruna T Bansal (AT)

Acclarogen Ltd, Cambridge, UK.

Emmanuelle Berret (E)

European Respiratory Society, Lausanne, Switzerland.

Nils Christian (N)

ITTM SA, Esch-sur-Alzette, Luxembourg.

Andreas Kremer (A)

ITTM SA, Esch-sur-Alzette, Luxembourg.

Anna Alloni (A)

Biomeris SRL, Pavia, Italy.

Matteo Gabetta (M)

Biomeris SRL, Pavia, Italy.

Chris Marshall (C)

Metaseq Ltd, Malvern, UK.

Scott Wagers (S)

BIOSCI Consulting, Maasmechelen, Belgium.

Ratko Djukanovic (R)

NIHR Southampton Respiratory Biomedical Research Unit, Faculty of Medicine, University of Southampton, Southampton, UK.

Celeste Porsbjerg (C)

Dept of Pulmonology, Bispebjerg Hospital, University of Copenhagen, Copenhagen, Denmark.

Dominique Hamerlijnck (D)

Patient Advisory Group, European Lung Foundation, Sheffield, UK.

Olivia Fulton (O)

Patient Advisory Group, European Lung Foundation, Sheffield, UK.

Anneke Ten Brinke (A)

Dept of Pulmonology, Medical Centre Leeuwarden, Leeuwarden, The Netherlands.

Elisabeth H Bel (EH)

Amsterdam Medical Centers, Location AMC, University of Amsterdam, Amsterdam, The Netherlands.

Jacob K Sont (JK)

Dept of Biomedical Data Sciences, Medical Decision Making, Leiden University Medical Center, Leiden, The Netherlands.

Classifications MeSH