High-throughput nanopore sequencing of

AlphaFold SPOR domain Treponema pallidum genomics nanopore next generation sequencing (NGS) syphilis trRosetta

Journal

Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977

Informations de publication

Date de publication:
2022
Historique:
received: 29 07 2022
accepted: 22 08 2022
entrez: 7 10 2022
pubmed: 8 10 2022
medline: 8 10 2022
Statut: epublish

Résumé

Sequencing of most

Identifiants

pubmed: 36204625
doi: 10.3389/fmicb.2022.1007056
pmc: PMC9531955
doi:

Types de publication

Journal Article

Langues

eng

Pagination

1007056

Subventions

Organisme : NIAID NIH HHS
ID : U19 AI144177
Pays : United States

Informations de copyright

Copyright © 2022 Lieberman, Armstrong, Chung, Pfalmer, Hennelly, Haynes, Romeis, Wang, Zhang, Kou, Ciccarese, Conte, Cusini, Drago, Nakayama, Lee, Ohnishi, Konda, Vargas, Eguiluz, Caceres, Klausner, Mitja, Rompalo, Mulcahy, Hook, Hoffman, Matoga, Zheng, Yang, Lopez-Medina, Ramirez, Radolf, Hawley, Salazar, Lukehart, Seña, Parr, Giacani and Greninger.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

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Auteurs

Nicole A P Lieberman (NAP)

Department of Laboratory Medicine and Pathology, University of Washington School of Medicine, Seattle, WA, United States.

Thaddeus D Armstrong (TD)

Department of Laboratory Medicine and Pathology, University of Washington School of Medicine, Seattle, WA, United States.

Benjamin Chung (B)

Department of Laboratory Medicine and Pathology, University of Washington School of Medicine, Seattle, WA, United States.

Daniel Pfalmer (D)

Department of Laboratory Medicine and Pathology, University of Washington School of Medicine, Seattle, WA, United States.

Christopher M Hennelly (CM)

Division of Infectious Diseases, Institute for Global Health and Infectious Diseases, The University of North Carolina at Chapel Hill, Chapel Hill, NC, United States.

Austin Haynes (A)

Division of Allergy and Infectious Diseases, Department of Medicine, University of Washington School of Medicine, Seattle, WA, United States.

Emily Romeis (E)

Division of Allergy and Infectious Diseases, Department of Medicine, University of Washington School of Medicine, Seattle, WA, United States.

Qian-Qiu Wang (QQ)

Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
National Center for STD Control, China Centers for Disease Control and Prevention, Nanjing, China.

Rui-Li Zhang (RL)

Department of Dermatology, The Second Affiliated Hospital of Nanjing Medical University, Nanjing, China.

Cai-Xia Kou (CX)

Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
National Center for STD Control, China Centers for Disease Control and Prevention, Nanjing, China.

Giulia Ciccarese (G)

Section of Dermatology, Department of Health Sciences, San Martino University Hospital, Genoa, Italy.

Ivano Dal Conte (ID)

Sexual Health Center, Department of Prevention, ASL Città di Torino, Turin, Italy.

Marco Cusini (M)

Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.

Francesco Drago (F)

Section of Dermatology, Department of Health Sciences, San Martino University Hospital, Genoa, Italy.

Shu-Ichi Nakayama (SI)

Department of Bacteriology I, National Institute of Infectious Diseases, Tokyo, Japan.

Kenichi Lee (K)

Department of Bacteriology I, National Institute of Infectious Diseases, Tokyo, Japan.

Makoto Ohnishi (M)

Department of Bacteriology I, National Institute of Infectious Diseases, Tokyo, Japan.

Kelika A Konda (KA)

Unit of Health, Sexuality and Human Development, Laboratory of Sexual Health, Universidad Peruana Cayetano-Heredia, Lima, Peru.
Keck School of Medicine, University of Southern California, Los Angeles, CA, United States.

Silver K Vargas (SK)

Unit of Health, Sexuality and Human Development, Laboratory of Sexual Health, Universidad Peruana Cayetano-Heredia, Lima, Peru.
School of Public Health and Administration "Carlos Vidal Layseca", Universidad Peruana Cayetano Heredia, Lima, Peru.

Maria Eguiluz (M)

Unit of Health, Sexuality and Human Development, Laboratory of Sexual Health, Universidad Peruana Cayetano-Heredia, Lima, Peru.

Carlos F Caceres (CF)

Unit of Health, Sexuality and Human Development, Laboratory of Sexual Health, Universidad Peruana Cayetano-Heredia, Lima, Peru.

Jeffrey D Klausner (JD)

Keck School of Medicine, University of Southern California, Los Angeles, CA, United States.

Oriol Mitja (O)

Fight Aids and Infectious Diseases Foundation, Hospital Germans Trias i Pujol, Barcelona, Spain.
Lihir Medical Centre, International SOS, Londolovit, Papua New Guinea.

Anne Rompalo (A)

Department of Infectious Diseases, Johns Hopkins Medical Institutions, Baltimore, MD, United States.

Fiona Mulcahy (F)

Department of Genito Urinary Medicine and Infectious Diseases, St. James's Hospital, Dublin, Ireland.

Edward W Hook (EW)

Department of Medicine, University of Alabama at Birmingham, Birmingham, AL, United States.
Department of Epidemiology, University of Alabama at Birmingham, Birmingham, AL, United States.
Department of Microbiology, University of Alabama at Birmingham, Birmingham, AL, United States.

Irving F Hoffman (IF)

Division of Infectious Diseases, Institute for Global Health and Infectious Diseases, The University of North Carolina at Chapel Hill, Chapel Hill, NC, United States.
UNC Project-Malawi, Lilongwe, Malawi.

Mitch M Matoga (MM)

Division of Infectious Diseases, Institute for Global Health and Infectious Diseases, The University of North Carolina at Chapel Hill, Chapel Hill, NC, United States.
UNC Project-Malawi, Lilongwe, Malawi.

Heping Zheng (H)

Dermatology Hospital of Southern Medical University, Guangzhou, China.
Institute for Global Health and Sexually Transmitted Infections, Guangzhou, China.

Bin Yang (B)

Dermatology Hospital of Southern Medical University, Guangzhou, China.
Institute for Global Health and Sexually Transmitted Infections, Guangzhou, China.

Eduardo Lopez-Medina (E)

Centro Internacional de Entrenamiento e Investigaciones Medicas (CIDEIM), Cali, Colombia.
Centro de Estudios en Infectología Pediátrica (CEIP), Cali, Colombia.

Lady G Ramirez (LG)

Centro Internacional de Entrenamiento e Investigaciones Medicas (CIDEIM), Cali, Colombia.
Universidad ICESI, Cali, Colombia.

Justin D Radolf (JD)

Department of Medicine, UConn Health, Farmington, CT, United States.
Department of Pediatrics, UConn Health, Farmington, CT, United States.
Department of Molecular Biology and Biophysics, UConn Health, Farmington, CT, United States.
Department of Immunology, UConn Health, Farmington, CT, United States.
Department of Genetics and Genome Sciences, UConn Health, Farmington, CT, United States.

Kelly L Hawley (KL)

Department of Medicine, UConn Health, Farmington, CT, United States.
Department of Pediatrics, UConn Health, Farmington, CT, United States.
Department of Immunology, UConn Health, Farmington, CT, United States.
Division of Infectious Diseases and Immunology, Connecticut Children's Medical Center, Hartford, CT, United States.

Juan C Salazar (JC)

Department of Pediatrics, UConn Health, Farmington, CT, United States.
Department of Immunology, UConn Health, Farmington, CT, United States.
Division of Infectious Diseases and Immunology, Connecticut Children's Medical Center, Hartford, CT, United States.

Sheila A Lukehart (SA)

Division of Allergy and Infectious Diseases, Department of Medicine, University of Washington School of Medicine, Seattle, WA, United States.
Department of Global Health, University of Washington School of Medicine, Seattle, WA, United States.

Arlene C Seña (AC)

Division of Infectious Diseases, Institute for Global Health and Infectious Diseases, The University of North Carolina at Chapel Hill, Chapel Hill, NC, United States.

Jonathan B Parr (JB)

Division of Infectious Diseases, Institute for Global Health and Infectious Diseases, The University of North Carolina at Chapel Hill, Chapel Hill, NC, United States.

Lorenzo Giacani (L)

Division of Allergy and Infectious Diseases, Department of Medicine, University of Washington School of Medicine, Seattle, WA, United States.
Department of Global Health, University of Washington School of Medicine, Seattle, WA, United States.

Alexander L Greninger (AL)

Department of Laboratory Medicine and Pathology, University of Washington School of Medicine, Seattle, WA, United States.
Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, United States.

Classifications MeSH