Applying genomic approaches to delineate conservation strategies using the freshwater mussel Margaritifera margaritifera in the Iberian Peninsula as a model.

Animals Bivalvia / genetics Fresh Water Genetic Variation Genomics Seafood Trout / genetics

Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
07 10 2022
Historique:
received: 14 06 2022
accepted: 21 09 2022
entrez: 7 10 2022
pubmed: 8 10 2022
medline: 12 10 2022
Statut: epublish

Résumé

Effective conservation actions to counteract the current decline of populations and species require a deep knowledge on their genetic structure. We used Single Nucleotide Polymorphisms (SNPs) to infer the population structure of the highly threatened freshwater pearl mussel Margaritifera margaritifera in the Iberian Peninsula. A total of 130 individuals were collected from 26 locations belonging to 16 basins. We obtained 31,692 SNPs through Genotyping by Sequencing (GBS) and used this dataset to infer population structure. Genetic diversity given as observed heterozygosity was low. Pairwise F

Identifiants

DOI: 10.1038/s41598-022-20947-5 PMID: 36207367 PMC: PMC9546909
pubmed: 36207367
doi: 10.1038/s41598-022-20947-5
pii: 10.1038/s41598-022-20947-5
pmc: PMC9546909
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

16894

Informations de copyright

© 2022. The Author(s).

Références

Bioinformatics. 2012 Dec 1;28(23):3150-2
pubmed: 23060610
Biol Rev Camb Philos Soc. 2017 Feb;92(1):572-607
pubmed: 26727244
Trends Ecol Evol. 2012 Sep;27(9):489-96
pubmed: 22727017
Ecol Evol. 2019 Feb 06;9(4):2106-2120
pubmed: 30847096
Mol Ecol Resour. 2011 Mar;11 Suppl 1:123-36
pubmed: 21429169
Sci Rep. 2019 Jul 18;9(1):10409
pubmed: 31320723
Mol Ecol. 2017 Jan;26(2):420-430
pubmed: 27933683
F1000Res. 2018 Aug 24;7:1338
pubmed: 30254741
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Sci Rep. 2021 May 24;11(1):10752
pubmed: 34031525
Mol Ecol. 2005 Feb;14(2):425-39
pubmed: 15660935
Mol Ecol. 2019 Nov;28(21):4737-4754
pubmed: 31550391
Mol Ecol. 2000 Sep;9(9):1324-38
pubmed: 10972772
DNA Res. 2021 May 2;28(2):
pubmed: 33755103
BMC Genomics. 2020 Jun 1;21(1):382
pubmed: 32487020
Mol Ecol Resour. 2010 May;10(3):564-7
pubmed: 21565059
Mol Ecol. 2008 Feb;17(4):997-1008
pubmed: 18261044
BMC Genomics. 2017 Jul 21;18(1):556
pubmed: 28732460
Sci Rep. 2021 Aug 6;11(1):16019
pubmed: 34362991
Bioinformatics. 2016 Oct 1;32(19):3047-8
pubmed: 27312411
Bioinformatics. 2011 Aug 1;27(15):2156-8
pubmed: 21653522
PLoS One. 2017 Jan 24;12(1):e0170685
pubmed: 28118391
Genome Res. 2009 Sep;19(9):1655-64
pubmed: 19648217
Heredity (Edinb). 2001 Aug;87(Pt 2):198-206
pubmed: 11703510
Evolution. 1984 Nov;38(6):1358-1370
pubmed: 28563791
Mol Ecol. 2021 Jan;30(1):62-82
pubmed: 33145846
Bioinformatics. 2007 Jul 15;23(14):1801-6
pubmed: 17485429

Auteurs

S Perea (S)

MARE-Marine and Environmental Sciences Centre/ARNET-Aquatic Research Network, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016, Lisbon, Portugal.
Instituto de Biología, Departamento de Zoología, Universidad Nacional Autónoma de México, Tercer Circuito Exterior S/N, C.P. 04510, Mexico City, Mexico.

S L Mendes (SL)

MARE-Marine and Environmental Sciences Centre/ARNET-Aquatic Research Network, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016, Lisbon, Portugal.
cE3c-Centre for Ecology, Evolution and Environmental Changes, Department of Animal Biology, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016, Lisbon, Portugal.

C Sousa-Santos (C)

MARE-Marine and Environmental Sciences Centre/ARNET-Aquatic Research Network, ISPA-Instituto Superior de Ciências Psicológicas, Sociais e da Vida, Rua Jardim do Tabaco, 34, 1149-041, Lisbon, Portugal.

P Ondina (P)

Departamento de Zooloxía, Xenética e Antropoloxía Física, Universidade de Santiago de Compostela, Campus Terra, 27002, Lugo, Spain.
IBADER-Instituto de Biodiversidade Agraria E Desenvolvemento Rural, Campus, Universidade de Santiago de Compostela, Campus Terra, 27002, Lugo, Spain.

R Amaro (R)

Departamento de Zooloxía, Xenética e Antropoloxía Física, Universidade de Santiago de Compostela, Campus Terra, 27002, Lugo, Spain.
IBADER-Instituto de Biodiversidade Agraria E Desenvolvemento Rural, Campus, Universidade de Santiago de Compostela, Campus Terra, 27002, Lugo, Spain.

J Castro (J)

Departamento de Zooloxía, Xenética e Antropoloxía Física, Universidade de Santiago de Compostela, Campus Terra, 27002, Lugo, Spain.
IBADER-Instituto de Biodiversidade Agraria E Desenvolvemento Rural, Campus, Universidade de Santiago de Compostela, Campus Terra, 27002, Lugo, Spain.

E San-Miguel (E)

Departamento de Zooloxía, Xenética e Antropoloxía Física, Universidade de Santiago de Compostela, Campus Terra, 27002, Lugo, Spain.
IBADER-Instituto de Biodiversidade Agraria E Desenvolvemento Rural, Campus, Universidade de Santiago de Compostela, Campus Terra, 27002, Lugo, Spain.

C S Lima (CS)

MARE-Marine and Environmental Sciences Centre/ARNET-Aquatic Research Network, ISPA-Instituto Superior de Ciências Psicológicas, Sociais e da Vida, Rua Jardim do Tabaco, 34, 1149-041, Lisbon, Portugal.

M Garcia (M)

MARE-Marine and Environmental Sciences Centre/ARNET-Aquatic Research Network, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016, Lisbon, Portugal.

V Velasquez (V)

Dirección General del Medio Natural y Desarrollo Rural, Oviedo, Principado de Asturias, Spain.

P Garcia-Roves (P)

Dirección General del Medio Natural y Desarrollo Rural, Oviedo, Principado de Asturias, Spain.

D Fernández (D)

Biosfera-Consultoría Medioambiental, C/Candamo no. 5,, C.P. 33012, Oviedo, Asturias, Spain.

R Araujo (R)

Museo Nacional de Ciencias Naturales - CSIC, C/José Gutierrez Abascal, 2, 28006, Madrid, Spain.

V C Sousa (VC)

cE3c-Centre for Ecology, Evolution and Environmental Changes, Department of Animal Biology, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016, Lisbon, Portugal.

J Reis (J)

MARE-Marine and Environmental Sciences Centre/ARNET-Aquatic Research Network, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016, Lisbon, Portugal. joaquim.reis@fc.ul.pt.

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Classifications MeSH

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