Genetic characterization of sheep pox virus strains from outbreaks in Central Russia in 2018-2019.
Capripoxvirus
next-generation sequencing (NGS)
phylogenetic analysis
sheep pox virus
vaccine strain NISKHI
whole-genome sequencing (WGS)
Journal
Transboundary and emerging diseases
ISSN: 1865-1682
Titre abrégé: Transbound Emerg Dis
Pays: Germany
ID NLM: 101319538
Informations de publication
Date de publication:
Nov 2022
Nov 2022
Historique:
revised:
25
08
2022
received:
13
07
2022
accepted:
03
10
2022
pubmed:
12
10
2022
medline:
7
2
2023
entrez:
11
10
2022
Statut:
ppublish
Résumé
This study investigates the phylogenomic relatedness between sheep pox viruses (SPPVs) circulating in Central Russia in 2018-2019 with the NISKHI vaccine strain used in the country, based on their complete genome sequences. The sheep pox outbreaks occurred 1 year apart in the adjacent regions of Tula and Moscow. Full genome sequences were generated by sequencing DNA directly obtained from Trizol-extracted scabs, using the DNBSEQ-400 platform (MGI Tech, China). Phylogenetic analysis indicated that the SPPV isolates from Russia clusters with previously published sequences from Srinagar in the Kashmir province of India in 2000 (SPPV-Srinagar strain) as well as SPPV A strain from Kazakhstan in 2000. The aforementioned cluster belonged to a sister clade containing the NISKHI vaccine strain, thus indicating that the recent outbreaks were not genetically linked to the widely used vaccine.
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
e3430-e3435Subventions
Organisme : Ministry of Science and Higher Education of the Russian Federation
ID : 075-15-2021-1054
Informations de copyright
© 2022 Wiley-VCH GmbH.
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