An analysis-ready and quality controlled resource for pediatric brain white-matter research.
Journal
Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192
Informations de publication
Date de publication:
12 10 2022
12 10 2022
Historique:
received:
20
04
2022
accepted:
12
09
2022
entrez:
12
10
2022
pubmed:
13
10
2022
medline:
15
10
2022
Statut:
epublish
Résumé
We created a set of resources to enable research based on openly-available diffusion MRI (dMRI) data from the Healthy Brain Network (HBN) study. First, we curated the HBN dMRI data (N = 2747) into the Brain Imaging Data Structure and preprocessed it according to best-practices, including denoising and correcting for motion effects, susceptibility-related distortions, and eddy currents. Preprocessed, analysis-ready data was made openly available. Data quality plays a key role in the analysis of dMRI. To optimize QC and scale it to this large dataset, we trained a neural network through the combination of a small data subset scored by experts and a larger set scored by community scientists. The network performs QC highly concordant with that of experts on a held out set (ROC-AUC = 0.947). A further analysis of the neural network demonstrates that it relies on image features with relevance to QC. Altogether, this work both delivers resources to advance transdiagnostic research in brain connectivity and pediatric mental health, and establishes a novel paradigm for automated QC of large datasets.
Identifiants
pubmed: 36224186
doi: 10.1038/s41597-022-01695-7
pii: 10.1038/s41597-022-01695-7
pmc: PMC9556519
doi:
Types de publication
Dataset
Journal Article
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Pagination
616Subventions
Organisme : NIMH NIH HHS
ID : R01 MH120482
Pays : United States
Investigateurs
Nicholas J Abbott
(NJ)
John A E Anderson
(JAE)
B Gagana
(B)
MaryLena Bleile
(M)
Peter S Bloomfield
(PS)
Vince Bottom
(V)
Josiane Bourque
(J)
Rory Boyle
(R)
Julia K Brynildsen
(JK)
Navona Calarco
(N)
Jaime J Castrellon
(JJ)
Natasha Chaku
(N)
Bosi Chen
(B)
Sidhant Chopra
(S)
Emily B J Coffey
(EBJ)
Nigel Colenbier
(N)
Daniel J Cox
(DJ)
James Elliott Crippen
(JE)
Jacob J Crouse
(JJ)
Szabolcs David
(S)
Benjamin De Leener
(B)
Gwyneth Delap
(G)
Zhi-De Deng
(ZD)
Jules Roger Dugre
(JR)
Anders Eklund
(A)
Kirsten Ellis
(K)
Arielle Ered
(A)
Harry Farmer
(H)
Joshua Faskowitz
(J)
Jody E Finch
(JE)
Guillaume Flandin
(G)
Matthew W Flounders
(MW)
Leon Fonville
(L)
Summer B Frandsen
(SB)
Dea Garic
(D)
Patricia Garrido-Vásquez
(P)
Gabriel Gonzalez-Escamilla
(G)
Shannon E Grogans
(SE)
Mareike Grotheer
(M)
David C Gruskin
(DC)
Guido I Guberman
(GI)
Edda Briana Haggerty
(EB)
Younghee Hahn
(Y)
Elizabeth H Hall
(EH)
Jamie L Hanson
(JL)
Yann Harel
(Y)
Bruno Hebling Vieira
(BH)
Meike D Hettwer
(MD)
Harriet Hobday
(H)
Corey Horien
(C)
Fan Huang
(F)
Zeeshan M Huque
(ZM)
Anthony R James
(AR)
Isabella Kahhale
(I)
Sarah L H Kamhout
(SLH)
Arielle S Keller
(AS)
Harmandeep Singh Khera
(HS)
Gregory Kiar
(G)
Peter Alexander Kirk
(PA)
Simon H Kohl
(SH)
Stephanie A Korenic
(SA)
Cole Korponay
(C)
Alyssa K Kozlowski
(AK)
Nevena Kraljevic
(N)
Alberto Lazari
(A)
Mackenzie J Leavitt
(MJ)
Zhaolong Li
(Z)
Giulia Liberati
(G)
Elizabeth S Lorenc
(ES)
Annabelle Julina Lossin
(AJ)
Leon D Lotter
(LD)
David M Lydon-Staley
(DM)
Christopher R Madan
(CR)
Neville Magielse
(N)
Hilary A Marusak
(HA)
Julien Mayor
(J)
Amanda L McGowan
(AL)
Kahini P Mehta
(KP)
Steven Lee Meisler
(SL)
Cleanthis Michael
(C)
Mackenzie E Mitchell
(ME)
Simon Morand-Beaulieu
(S)
Benjamin T Newman
(BT)
Jared A Nielsen
(JA)
Shane M O'Mara
(SM)
Amar Ojha
(A)
Adam Omary
(A)
Evren Özarslan
(E)
Linden Parkes
(L)
Madeline Peterson
(M)
Adam Robert Pines
(AR)
Claudia Pisanu
(C)
Ryan R Rich
(RR)
Matthew D Sacchet
(MD)
Ashish K Sahoo
(AK)
Amjad Samara
(A)
Farah Sayed
(F)
Jonathan Thore Schneider
(JT)
Lindsay S Shaffer
(LS)
Ekaterina Shatalina
(E)
Sara A Sims
(SA)
Skyler Sinclair
(S)
Jae W Song
(JW)
Griffin Stockton Hogrogian
(GS)
Christian K Tamnes
(CK)
Ursula A Tooley
(UA)
Vaibhav Tripathi
(V)
Hamid B Turker
(HB)
Sofie Louise Valk
(SL)
Matthew B Wall
(MB)
Cheryl K Walther
(CK)
Yuchao Wang
(Y)
Bertil Wegmann
(B)
Thomas Welton
(T)
Alex I Wiesman
(AI)
Andrew G Wiesman
(AG)
Mark Wiesman
(M)
Drew E Winters
(DE)
Ruiyi Yuan
(R)
Sadie J Zacharek
(SJ)
Chris Zajner
(C)
Ilya Zakharov
(I)
Gianpaolo Zammarchi
(G)
Dale Zhou
(D)
Benjamin Zimmerman
(B)
Kurt Zoner
(K)
Commentaires et corrections
Type : ErratumIn
Type : ErratumIn
Type : ErratumIn
Informations de copyright
© 2022. The Author(s).
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