Signals of adaptation to agricultural stress in the genomes of two European bumblebees.

Anthropocene Bombus RADseq agricultural intensification bee decline global change population genomics

Journal

Frontiers in genetics
ISSN: 1664-8021
Titre abrégé: Front Genet
Pays: Switzerland
ID NLM: 101560621

Informations de publication

Date de publication:
2022
Historique:
received: 13 07 2022
accepted: 21 09 2022
entrez: 24 10 2022
pubmed: 25 10 2022
medline: 25 10 2022
Statut: epublish

Résumé

Human-induced environmental impacts on wildlife are widespread, causing major biodiversity losses. One major threat is agricultural intensification, typically characterised by large areas of monoculture, mechanical tillage, and the use of agrochemicals. Intensification leads to the fragmentation and loss of natural habitats, native vegetation, and nesting and breeding sites. Understanding the adaptability of insects to these changing environmental conditions is critical to predicting their survival. Bumblebees, key pollinators of wild and cultivated plants, are used as model species to assess insect adaptation to anthropogenic stressors. We investigated the effects of agricultural pressures on two common European bumblebees,

Identifiants

pubmed: 36276969
doi: 10.3389/fgene.2022.993416
pii: 993416
pmc: PMC9579324
doi:

Banques de données

Dryad
['10.5061/dryad.00000005j']

Types de publication

Journal Article

Langues

eng

Pagination

993416

Informations de copyright

Copyright © 2022 Hart, Verbeeck, Ariza, Cejas, Ghisbain, Honchar, Radchenko, Straka, Ljubomirov, Lecocq, Dániel-Ferreira, Flaminio, Bortolotti, Karise, Meeus, Smagghe, Vereecken, Vandamme, Michez and Maebe.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Références

J Chem Ecol. 2015 Apr;41(4):386-95
pubmed: 25845355
Heredity (Edinb). 2001 Jun;86(Pt 6):641-7
pubmed: 11595044
Mol Ecol. 2013 Jun;22(11):2841-7
pubmed: 23711105
Science. 2015 Jul 10;349(6244):177-80
pubmed: 26160945
Proc Natl Acad Sci U S A. 2021 Jan 12;118(2):
pubmed: 33431573
Mol Ecol. 2010 Feb;19(4):819-31
pubmed: 20089127
Evol Appl. 2020 Aug 18;14(1):53-68
pubmed: 33519956
Oecologia. 2022 Jun;199(2):289-299
pubmed: 35575832
Biochem Biophys Res Commun. 2006 Jan 20;339(3):939-48
pubmed: 16325765
Glob Chang Biol. 2018 Jan;24(1):101-116
pubmed: 28805965
Mol Ecol. 2014 May;23(9):2178-92
pubmed: 24655127
Mol Ecol. 1999 Mar;8(3):387-98
pubmed: 10199006
Mol Ecol. 2013 May;22(9):2483-95
pubmed: 23495763
Genes Dev. 1990 Mar;4(3):464-75
pubmed: 2338245
Mol Biol Evol. 2021 Jan 23;38(2):486-501
pubmed: 32946576
PeerJ. 2020 Sep 16;8:e9939
pubmed: 32995092
Sci Rep. 2016 Nov 23;6:37430
pubmed: 27876748
Commun Biol. 2020 Sep 7;3(1):489
pubmed: 32895437
Nat Protoc. 2017 Dec;12(12):2640-2659
pubmed: 29189774
PLoS One. 2015 Jun 10;10(6):e0127870
pubmed: 26061732
Trends Genet. 2014 Jul;30(7):308-21
pubmed: 24954581
Glob Chang Biol. 2021 Sep;27(18):4223-4237
pubmed: 34118096
Biol Rev Camb Philos Soc. 2021 Dec;96(6):2755-2770
pubmed: 34288353
Annu Rev Entomol. 2008;53:191-208
pubmed: 17803456
Insects. 2020 Feb 18;11(2):
pubmed: 32085627
Science. 2015 Mar 27;347(6229):1255957
pubmed: 25721506
Proc Natl Acad Sci U S A. 2011 Jan 11;108(2):662-7
pubmed: 21199943
J Gen Physiol. 1997 Aug;110(2):119-33
pubmed: 9236205
Adv In Insect Phys. 2014;46:389-433
pubmed: 29928068
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Mol Ecol. 2015 Mar;24(5):993-1006
pubmed: 25626470
PLoS One. 2018 Feb 6;13(2):e0192551
pubmed: 29408922
Glob Chang Biol. 2020 Jan;26(1):3-30
pubmed: 31663217
Mol Ecol. 2020 Mar;29(5):920-939
pubmed: 32031739
Conserv Biol. 2011 Aug;25(4):662-71
pubmed: 21771075
J Anim Ecol. 2009 Jan;78(1):247-52
pubmed: 19120605
Nature. 2015 Mar 12;519(7542):171-80
pubmed: 25762280
Mol Cell. 2017 Apr 6;66(1):129-140.e7
pubmed: 28388438
Sci Rep. 2019 Aug 29;9(1):12596
pubmed: 31467366
Sci Rep. 2016 Feb 10;6:20421
pubmed: 26861263
Nat Genet. 2000 May;25(1):25-9
pubmed: 10802651
Proc Biol Sci. 2018 Apr 25;285(1877):
pubmed: 29669900
Ecol Evol. 2013 Apr;3(4):807-21
pubmed: 23610626
Glob Chang Biol. 2020 Mar;26(3):1185-1195
pubmed: 31665557
Mol Ecol. 2013 Jun;22(11):3124-40
pubmed: 23701397
PLoS One. 2014 Aug 13;9(8):e104679
pubmed: 25118722
PLoS Genet. 2009 Oct;5(10):e1000695
pubmed: 19851460
J Anim Ecol. 2021 Oct;90(10):2421-2430
pubmed: 34096055
Trends Ecol Evol. 2015 Feb;30(2):78-87
pubmed: 25534246
Nucleic Acids Res. 2003 Jul 1;31(13):3784-8
pubmed: 12824418
BMC Evol Biol. 2013 Dec 02;13:263
pubmed: 24295171
Proc Biol Sci. 2007 Feb 7;274(1608):303-13
pubmed: 17164193
Nat Rev Genet. 2016 Feb;17(2):81-92
pubmed: 26729255
Nat Rev Genet. 2011 Jun 17;12(7):499-510
pubmed: 21681211
Science. 2014 Jul 25;345(6195):401-6
pubmed: 25061202
Proc Natl Acad Sci U S A. 2016 May 31;113(22):6313-8
pubmed: 27185955
Science. 2013 Mar 29;339(6127):1608-11
pubmed: 23449997
Bioinformatics. 2011 Aug 1;27(15):2156-8
pubmed: 21653522
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Mol Ecol Resour. 2017 Nov;17(6):1136-1147
pubmed: 28078808
Bioinformatics. 2009 Feb 15;25(4):555-6
pubmed: 19129209
Ecol Evol. 2016 Jan 22;6(4):1075-91
pubmed: 26811748
Wilehm Roux Arch Dev Biol. 1983 Mar;192(2):62-74
pubmed: 28305500
Mol Ecol. 2014 Apr;23(8):2006-19
pubmed: 24611968
Genome Biol. 2015 Apr 24;16:76
pubmed: 25908251
Cancer Res. 1967 Feb;27(2):209-20
pubmed: 6018555
Annu Rev Entomol. 2020 Jan 7;65:209-232
pubmed: 31610137
Sci Rep. 2019 Mar 6;9(1):3724
pubmed: 30842465
Proc Natl Acad Sci U S A. 2021 Jan 12;118(2):
pubmed: 33431564
PLoS One. 2008;3(10):e3376
pubmed: 18852878
Development. 2004 Mar;131(5):965-73
pubmed: 14973298
Front Microbiol. 2020 May 28;11:943
pubmed: 32547504
Mol Ecol. 2018 Jul;27(14):2926-2942
pubmed: 29862596
Mol Ecol. 2016 Jan;25(2):454-69
pubmed: 26671840
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Ecotoxicol Environ Saf. 2019 Aug 30;178:1-8
pubmed: 30980963
Mol Ecol. 2018 Jul 10;:
pubmed: 29987880
Bioinformatics. 2010 Nov 15;26(22):2867-73
pubmed: 20926424
Sci Rep. 2020 Dec 18;10(1):22306
pubmed: 33339846
Mol Ecol. 2014 Jul;23(14):3384-95
pubmed: 24980963
Ecol Appl. 2016 Apr;26(3):726-39
pubmed: 27411246
Genetics. 2008 Oct;180(2):977-93
pubmed: 18780740
Mol Ecol. 2018 Mar;27(6):1342-1356
pubmed: 29524276
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712
Insect Sci. 2021 Jun;28(3):861-872
pubmed: 32401399

Auteurs

Alex F Hart (AF)

Ghent University, Faculty of Bioscience Engineering, Department of Plants and Crops, Lab of Agrozoology, Ghent, Belgium.

Jaro Verbeeck (J)

Ghent University, Faculty of Bioscience Engineering, Department of Plants and Crops, Lab of Agrozoology, Ghent, Belgium.

Daniel Ariza (D)

Ghent University, Faculty of Bioscience Engineering, Department of Plants and Crops, Lab of Agrozoology, Ghent, Belgium.

Diego Cejas (D)

Laboratory of Zoology, Research Institute for Biosciences, University of Mons, Mons, Belgium.

Guillaume Ghisbain (G)

Laboratory of Zoology, Research Institute for Biosciences, University of Mons, Mons, Belgium.
Smithsonian Tropical Research Institute, Gamboa, Panama.

Hanna Honchar (H)

Institute for Evolutionary Ecology, National Academy of Sciences of Ukraine, Kyiv, Ukraine.

Vladimir G Radchenko (VG)

Institute for Evolutionary Ecology, National Academy of Sciences of Ukraine, Kyiv, Ukraine.

Jakub Straka (J)

Charles University, Faculty of Science, Department of Zoology, Praha, Czech Republic.

Toshko Ljubomirov (T)

Institute of Biodiversity and Ecosystem Research-Bulgarian Academy of Sciences, Sofia, Bulgaria.

Thomas Lecocq (T)

Université de Lorraine, INRAE, URAFPA, Nancy, France.

Juliana Dániel-Ferreira (J)

Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden.

Simone Flaminio (S)

Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, Bologna, Italy.

Laura Bortolotti (L)

Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, Bologna, Italy.

Reet Karise (R)

Estonian University of Life Sciences, Institute of Agricultural and Environmental Sciences, Tartu, Estonia.

Ivan Meeus (I)

Ghent University, Faculty of Bioscience Engineering, Department of Plants and Crops, Lab of Agrozoology, Ghent, Belgium.

Guy Smagghe (G)

Ghent University, Faculty of Bioscience Engineering, Department of Plants and Crops, Lab of Agrozoology, Ghent, Belgium.

Nicolas Vereecken (N)

Agroecology Lab, Université Libre de Bruxelles (ULB), Brussels, Belgium.

Peter Vandamme (P)

Laboratory of Microbiology, Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium.

Denis Michez (D)

Laboratory of Zoology, Research Institute for Biosciences, University of Mons, Mons, Belgium.

Kevin Maebe (K)

Ghent University, Faculty of Bioscience Engineering, Department of Plants and Crops, Lab of Agrozoology, Ghent, Belgium.

Classifications MeSH