The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry.
Chemicals of emerging concern
Cheminformatics
Data exchange
Environmental contaminants
Exposomics
FAIR (Findable Accessible Interoperable Reusable) data
High resolution mass spectrometry
Non-target screening
Open science
Suspect screening
Journal
Environmental sciences Europe
ISSN: 2190-4707
Titre abrégé: Environ Sci Eur
Pays: Germany
ID NLM: 101571842
Informations de publication
Date de publication:
2022
2022
Historique:
received:
27
07
2022
accepted:
24
09
2022
entrez:
26
10
2022
pubmed:
27
10
2022
medline:
27
10
2022
Statut:
ppublish
Résumé
The NORMAN Association (https://www.norman-network.com/) initiated the NORMAN Suspect List Exchange (NORMAN-SLE; https://www.norman-network.com/nds/SLE/) in 2015, following the NORMAN collaborative trial on non-target screening of environmental water samples by mass spectrometry. Since then, this exchange of information on chemicals that are expected to occur in the environment, along with the accompanying expert knowledge and references, has become a valuable knowledge base for "suspect screening" lists. The NORMAN-SLE now serves as a FAIR (Findable, Accessible, Interoperable, Reusable) chemical information resource worldwide. The NORMAN-SLE contains 99 separate suspect list collections (as of May 2022) from over 70 contributors around the world, totalling over 100,000 unique substances. The substance classes include per- and polyfluoroalkyl substances (PFAS), pharmaceuticals, pesticides, natural toxins, high production volume substances covered under the European REACH regulation (EC: 1272/2008), priority contaminants of emerging concern (CECs) and regulatory lists from NORMAN partners. Several lists focus on transformation products (TPs) and complex features detected in the environment with various levels of provenance and structural information. Each list is available for separate download. The merged, curated collection is also available as the NORMAN Substance Database (NORMAN SusDat). Both the NORMAN-SLE and NORMAN SusDat are integrated within the NORMAN Database System (NDS). The individual NORMAN-SLE lists receive digital object identifiers (DOIs) and traceable versioning via a Zenodo community (https://zenodo.org/communities/norman-sle), with a total of > 40,000 unique views, > 50,000 unique downloads and 40 citations (May 2022). NORMAN-SLE content is progressively integrated into large open chemical databases such as PubChem (https://pubchem.ncbi.nlm.nih.gov/) and the US EPA's CompTox Chemicals Dashboard (https://comptox.epa.gov/dashboard/), enabling further access to these lists, along with the additional functionality and calculated properties these resources offer. PubChem has also integrated significant annotation content from the NORMAN-SLE, including a classification browser (https://pubchem.ncbi.nlm.nih.gov/classification/#hid=101). The NORMAN-SLE offers a specialized service for hosting suspect screening lists of relevance for the environmental community in an open, FAIR manner that allows integration with other major chemical resources. These efforts foster the exchange of information between scientists and regulators, supporting the paradigm shift to the "one substance, one assessment" approach. New submissions are welcome via the contacts provided on the NORMAN-SLE website (https://www.norman-network.com/nds/SLE/). The online version contains supplementary material available at 10.1186/s12302-022-00680-6.
Sections du résumé
Background
UNASSIGNED
The NORMAN Association (https://www.norman-network.com/) initiated the NORMAN Suspect List Exchange (NORMAN-SLE; https://www.norman-network.com/nds/SLE/) in 2015, following the NORMAN collaborative trial on non-target screening of environmental water samples by mass spectrometry. Since then, this exchange of information on chemicals that are expected to occur in the environment, along with the accompanying expert knowledge and references, has become a valuable knowledge base for "suspect screening" lists. The NORMAN-SLE now serves as a FAIR (Findable, Accessible, Interoperable, Reusable) chemical information resource worldwide.
Results
UNASSIGNED
The NORMAN-SLE contains 99 separate suspect list collections (as of May 2022) from over 70 contributors around the world, totalling over 100,000 unique substances. The substance classes include per- and polyfluoroalkyl substances (PFAS), pharmaceuticals, pesticides, natural toxins, high production volume substances covered under the European REACH regulation (EC: 1272/2008), priority contaminants of emerging concern (CECs) and regulatory lists from NORMAN partners. Several lists focus on transformation products (TPs) and complex features detected in the environment with various levels of provenance and structural information. Each list is available for separate download. The merged, curated collection is also available as the NORMAN Substance Database (NORMAN SusDat). Both the NORMAN-SLE and NORMAN SusDat are integrated within the NORMAN Database System (NDS). The individual NORMAN-SLE lists receive digital object identifiers (DOIs) and traceable versioning via a Zenodo community (https://zenodo.org/communities/norman-sle), with a total of > 40,000 unique views, > 50,000 unique downloads and 40 citations (May 2022). NORMAN-SLE content is progressively integrated into large open chemical databases such as PubChem (https://pubchem.ncbi.nlm.nih.gov/) and the US EPA's CompTox Chemicals Dashboard (https://comptox.epa.gov/dashboard/), enabling further access to these lists, along with the additional functionality and calculated properties these resources offer. PubChem has also integrated significant annotation content from the NORMAN-SLE, including a classification browser (https://pubchem.ncbi.nlm.nih.gov/classification/#hid=101).
Conclusions
UNASSIGNED
The NORMAN-SLE offers a specialized service for hosting suspect screening lists of relevance for the environmental community in an open, FAIR manner that allows integration with other major chemical resources. These efforts foster the exchange of information between scientists and regulators, supporting the paradigm shift to the "one substance, one assessment" approach. New submissions are welcome via the contacts provided on the NORMAN-SLE website (https://www.norman-network.com/nds/SLE/).
Supplementary Information
UNASSIGNED
The online version contains supplementary material available at 10.1186/s12302-022-00680-6.
Identifiants
pubmed: 36284750
doi: 10.1186/s12302-022-00680-6
pii: 680
pmc: PMC9587084
doi:
Types de publication
Journal Article
Langues
eng
Pagination
104Informations de copyright
© The Author(s) 2022.
Déclaration de conflit d'intérêts
Competing interestsThe authors declare that they have no competing interests.
Références
Sci Data. 2019 Aug 2;6(1):141
pubmed: 31375670
Environ Sci Technol. 2017 Oct 17;51(20):11505-11512
pubmed: 28877430
Environ Sci Technol. 2014 Feb 18;48(4):2097-8
pubmed: 24476540
Crit Rev Food Sci Nutr. 2022 May 18;:1-11
pubmed: 35585831
J Agric Food Chem. 2018 Jul 25;66(29):7577-7588
pubmed: 29944838
Metabolites. 2022 Feb 23;12(3):
pubmed: 35323641
J Cheminform. 2013 Jan 24;5(1):7
pubmed: 23343401
Anal Chem. 2020 Mar 17;92(6):4548-4557
pubmed: 32096630
J Cheminform. 2021 Mar 8;13(1):19
pubmed: 33685519
Environ Sci Technol. 2014;48(3):1811-8
pubmed: 24417318
Curr Res Food Sci. 2021 Sep 30;4:707-715
pubmed: 34693342
Environ Sci Technol. 2016 Jul 5;50(13):6698-707
pubmed: 26938046
J Am Soc Mass Spectrom. 2017 Dec;28(12):2692-2704
pubmed: 28952028
Nucleic Acids Res. 2021 Jan 8;49(D1):D1388-D1395
pubmed: 33151290
Anal Bioanal Chem. 2019 Apr;411(10):1957-1977
pubmed: 30830245
Database (Oxford). 2013 Oct 07;2013:bat070
pubmed: 24103452
J Cheminform. 2016 Jan 29;8:3
pubmed: 26834843
Database (Oxford). 2010;2010:bap024
pubmed: 20428313
Chemosphere. 2022 Mar;291(Pt 2):132830
pubmed: 34762886
iScience. 2020 Aug 18;23(9):101467
pubmed: 32891056
J Cheminform. 2021 Jul 7;13(1):50
pubmed: 34229711
Environ Int. 2019 Jun;127:420-429
pubmed: 30959307
J Hazard Mater. 2022 Aug 15;436:129276
pubmed: 35739789
Water Res. 2021 Oct 1;204:117645
pubmed: 34547688
J Hazard Mater. 2019 Feb 15;364:332-338
pubmed: 30384243
Comput Toxicol. 2019 Nov 1;12:
pubmed: 33426407
Nucleic Acids Res. 2020 Jan 8;48(D1):D908-D912
pubmed: 31724701
Water Res. 2016 Apr 15;93:254-264
pubmed: 26921851
Environ Sci Technol. 2022 Jun 21;56(12):7448-7466
pubmed: 35533312
Chemosphere. 2015 Oct;137:198-206
pubmed: 26246044
Nat Methods. 2021 Nov;18(11):1370-1376
pubmed: 34725482
Water Res. 2019 Nov 15;165:114972
pubmed: 31450217
Food Chem. 2021 Nov 1;361:130130
pubmed: 34062458
Sci Total Environ. 2015 Jan 15;503-504:22-31
pubmed: 24951181
J Cheminform. 2017 Nov 28;9(1):61
pubmed: 29185060
Sci Data. 2016 Mar 15;3:160018
pubmed: 26978244
Environ Int. 2020 Jun;139:105545
pubmed: 32361063
Sci Total Environ. 2019 Nov 10;690:636-646
pubmed: 31301504
Environ Sci Process Impacts. 2020 Dec 1;22(12):2345-2373
pubmed: 33125022
Anal Chem. 2021 Apr 27;93(16):6428-6436
pubmed: 33845572
Sci Total Environ. 2021 Nov 10;794:148727
pubmed: 34323756
Environ Sci Technol. 2020 Apr 7;54(7):4344-4355
pubmed: 31971370
Environ Sci Technol. 2020 Dec 1;54(23):15120-15131
pubmed: 33207875
Environ Int. 2022 Jan;158:106885
pubmed: 34560325
Anal Bioanal Chem. 2019 Jul;411(19):4683-4700
pubmed: 31209548
Anal Bioanal Chem. 2010 Jun;397(3):943-51
pubmed: 20232059
Int J Hyg Environ Health. 2019 May;222(4):635-644
pubmed: 30737165
Environ Sci Technol. 2021 Aug 3;55(15):10343-10353
pubmed: 34291901
Rev Environ Contam Toxicol. 2019;246:1-32
pubmed: 29280081
Chem Sci. 2018 Nov 27;10(4):983-993
pubmed: 30774892
Anal Bioanal Chem. 2022 Jan;414(3):1217-1225
pubmed: 34240229
Environ Sci Eur. 2018;30(1):5
pubmed: 29568720
Anal Chem. 2013 Nov 5;85(21):10312-20
pubmed: 24161211
Water Res. 2021 May 15;196:117017
pubmed: 33765498
Nat Biotechnol. 2019 Apr;37(4):358-367
pubmed: 30940948
Metabolites. 2021 Oct 29;11(11):
pubmed: 34822403
Chem Biol Interact. 2005 Aug 15;155(3):165-80
pubmed: 16098497
Environ Sci Technol. 2016 Sep 20;50(18):10065-72
pubmed: 27556594
J Mol Biol. 2022 Jun 15;434(11):167514
pubmed: 35227770
J Cheminform. 2018 Aug 30;10(1):45
pubmed: 30167882
J Cheminform. 2019 Jan 5;11(1):2
pubmed: 30612223
Anal Chem. 2021 Aug 24;93(33):11601-11611
pubmed: 34382770
J Chromatogr A. 2021 Feb 8;1638:461899
pubmed: 33493975
J Mass Spectrom. 2013 Jan;48(1):89-99
pubmed: 23303751
Sci Total Environ. 2015 Dec 15;538:934-41
pubmed: 26363605
Environ Sci Technol. 2017 May 16;51(10):5357-5359
pubmed: 28475325
Database (Oxford). 2012 Aug 09;2012:bas031
pubmed: 22879444
Nucleic Acids Res. 2017 Jan 4;45(D1):D979-D984
pubmed: 27924041
Environ Sci Technol. 2018 Mar 6;52(5):3125-3135
pubmed: 29405058
J Environ Manage. 2021 Feb 15;280:111692
pubmed: 33293165
J Cheminform. 2011 Oct 07;3:33
pubmed: 21982300
Sci Data. 2021 Aug 24;8(1):223
pubmed: 34429429
Environ Sci Technol. 2021 Jan 19;55(2):1045-1056
pubmed: 33395277
J Chem Inf Model. 2021 Feb 22;61(2):565-570
pubmed: 33481596
Food Chem. 2022 Feb 1;369:130567
pubmed: 34492611
J Hazard Mater. 2022 Apr 15;428:128194
pubmed: 35033918
Sci Total Environ. 2021 Jan 1;750:141519
pubmed: 32861074
Environ Sci Technol. 2018 May 1;52(9):5135-5144
pubmed: 29651850
Environ Sci Process Impacts. 2019 Sep 18;21(9):1426-1445
pubmed: 31305828
Anal Bioanal Chem. 2015 Aug;407(21):6237-55
pubmed: 25976391
J Cheminform. 2017 Jun 6;9(1):33
pubmed: 29086040
Water Res. 2021 May 15;196:116994
pubmed: 33773453
J Chem Inf Model. 2015 Nov 23;55(11):2324-37
pubmed: 26479676
ACS Omega. 2020 Apr 22;5(19):10633-10640
pubmed: 32455181
Sci Total Environ. 2019 Feb 15;651(Pt 2):3253-3268
pubmed: 30463173
Environ Int. 2021 May;150:106225
pubmed: 33272655
Environ Int. 2021 Jul;152:106511
pubmed: 33773387
J Mass Spectrom. 2010 Jul;45(7):703-14
pubmed: 20623627
Environ Sci Pollut Res Int. 2005 Sep;12(5):252-6
pubmed: 16206716
Environ Sci Technol. 2015 Oct 20;49(20):12333-41
pubmed: 26418421
Water Res. 2019 Nov 15;165:114973
pubmed: 31430651
Sci Total Environ. 2016 Jan 15;541:1097-1105
pubmed: 26473711
Environ Sci Process Impacts. 2017 Mar 22;19(3):438-448
pubmed: 28234392
Environ Int. 2021 Jan;146:106194
pubmed: 33115697