Identifying the Main Drivers in Microbial Diversity for Cabernet Sauvignon Cultivars from Europe to South Africa: Evidence for a Cultivar-Specific Microbial Fingerprint.

meta taxonomics mycobiome vine cultivar wine grape

Journal

Journal of fungi (Basel, Switzerland)
ISSN: 2309-608X
Titre abrégé: J Fungi (Basel)
Pays: Switzerland
ID NLM: 101671827

Informations de publication

Date de publication:
29 Sep 2022
Historique:
received: 25 07 2022
revised: 26 09 2022
accepted: 27 09 2022
entrez: 27 10 2022
pubmed: 28 10 2022
medline: 28 10 2022
Statut: epublish

Résumé

Microbial diversity in vineyards and in grapes has generated significant scientific interest. From a biotechnological perspective, vineyard and grape biodiversity has been shown to impact soil, vine, and grape health and to determine the fermentation microbiome and the final character of wine. Thus, an understanding of the drivers that are responsible for the differences in vineyard and grape microbiota is required. The impact of soil and climate, as well as of viticultural practices in geographically delimited areas, have been reported. However, the limited scale makes the identification of generally applicable drivers of microbial biodiversity and of specific microbial fingerprints challenging. The comparison and meta-analysis of different datasets is furthermore complicated by differences in sampling and in methodology. Here we present data from a wide-ranging coordinated approach, using standardized sampling and data generation and analysis, involving four countries with different climates and viticultural traditions. The data confirm the existence of a grape core microbial consortium, but also provide evidence for country-specific microbiota and suggest the existence of a cultivar-specific microbial fingerprint for Cabernet Sauvignon grape. This study puts in evidence new insight of the grape microbial community in two continents and the importance of both location and cultivar for the definition of the grape microbiome.

Identifiants

pubmed: 36294599
pii: jof8101034
doi: 10.3390/jof8101034
pmc: PMC9604871
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : European Commission
ID : FP7-IRSES-2013-GA612441
Organisme : Winetech
ID : SU IWBT 16-02

Références

ISME J. 2015 Sep;9(9):2003-11
pubmed: 25756681
Environ Microbiol. 2014 Sep;16(9):2848-58
pubmed: 24650123
Int J Food Microbiol. 2016 Feb 16;219:56-63
pubmed: 26736065
Bioinformatics. 2010 Jan 1;26(1):139-40
pubmed: 19910308
Front Microbiol. 2022 Feb 25;12:636639
pubmed: 35281311
Nat Methods. 2010 May;7(5):335-6
pubmed: 20383131
Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):E139-48
pubmed: 24277822
PLoS One. 2012;7(12):e52609
pubmed: 23300721
Environ Microbiol Rep. 2017 Dec;9(6):742-749
pubmed: 28892290
Curr Microbiol. 2021 Apr;78(4):1086-1098
pubmed: 33630126
Food Res Int. 2018 Jan;103:478-491
pubmed: 29389638
Int J Food Microbiol. 2021 Jan 2;338:108983
pubmed: 33261862
J Fungi (Basel). 2022 Apr 16;8(4):
pubmed: 35448641
Environ Microbiol. 2021 Apr;23(4):1842-1857
pubmed: 32686214
Foods. 2021 Jul 16;10(7):
pubmed: 34359520
Hortic Res. 2022 Feb 19;:
pubmed: 35184168
J Agric Food Chem. 2021 Jul 21;69(28):7817-7830
pubmed: 34250809
Genome Biol. 2014;15(12):550
pubmed: 25516281
Front Microbiol. 2015 Nov 30;6:1358
pubmed: 26648930
PLoS One. 2016 Jun 14;11(6):e0157383
pubmed: 27299312
PLoS One. 2017 Sep 11;12(9):e0184615
pubmed: 28892512
mBio. 2015 Mar 24;6(2):
pubmed: 25805735
mSphere. 2020 Aug 12;5(4):
pubmed: 32817452
Appl Environ Microbiol. 2013 Apr;79(8):2519-26
pubmed: 23377949
Food Microbiol. 2022 Sep;106:104037
pubmed: 35690441
Front Microbiol. 2018 May 15;9:946
pubmed: 29867854
Nucleic Acids Res. 2017 Jul 3;45(W1):W180-W188
pubmed: 28449106

Auteurs

Jordi Tronchoni (J)

Faculty of Health Sciences, Valencian International University, 46002 Valencia, Spain.

Mathabatha Evodia Setati (ME)

South African Grape and Wine Research Institute, Stellenbosch University, Stellenbosch 7602, South Africa.

Daniela Fracassetti (D)

Department of Food, Environmental and Nutritional Sciences, Università degli Studi di Milano, 20133 Milan, Italy.

Federica Valdetara (F)

Department of Food, Environmental and Nutritional Sciences, Università degli Studi di Milano, 20133 Milan, Italy.

David Maghradze (D)

Faculty of Viticulture and Winemaking, Caucasus International University, 0141 Tbilisi, Georgia.

Roberto Foschino (R)

Department of Food, Environmental and Nutritional Sciences, Università degli Studi di Milano, 20133 Milan, Italy.
Department of Biomedical, Surgical and Dental Sciences, Università degli Studi di Milano, 20122 Milan, Italy.

Jose Antonio Curiel (JA)

Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, 28040 Madrid, Spain.

Pilar Morales (P)

Instituto de Ciencias de la Vid y del Vino, CSIC, Gobierno de la Rioja, Universidad de La Rioja, 26006 Logroño, Spain.

Ramon Gonzalez (R)

Instituto de Ciencias de la Vid y del Vino, CSIC, Gobierno de la Rioja, Universidad de La Rioja, 26006 Logroño, Spain.

Ileana Vigentini (I)

Department of Food, Environmental and Nutritional Sciences, Università degli Studi di Milano, 20133 Milan, Italy.
Department of Biomedical, Surgical and Dental Sciences, Università degli Studi di Milano, 20122 Milan, Italy.

Florian Franz Bauer (FF)

South African Grape and Wine Research Institute, Stellenbosch University, Stellenbosch 7602, South Africa.

Classifications MeSH