Phylogenomic Analysis of the Plastid Genome of the Peruvian Purple Maize
Zea mays subsp. mays cv. ‘INIA 601’
plastid genome
plastid markers
purple maize
Journal
Plants (Basel, Switzerland)
ISSN: 2223-7747
Titre abrégé: Plants (Basel)
Pays: Switzerland
ID NLM: 101596181
Informations de publication
Date de publication:
15 Oct 2022
15 Oct 2022
Historique:
received:
01
09
2022
revised:
03
10
2022
accepted:
11
10
2022
entrez:
27
10
2022
pubmed:
28
10
2022
medline:
28
10
2022
Statut:
epublish
Résumé
Peru is an important center of diversity for maize; its different cultivars have been adapted to distinct altitudes and water availability and possess an array of kernel colors (red, blue, and purple), which are highly appreciated by local populations. Specifically, Peruvian purple maize is a collection of native landraces selected and maintained by indigenous cultures due to its intense purple color in the seed, bract, and cob. This color is produced by anthocyanin pigments, which have gained interest due to their potential use in the food, agriculture, and pharmaceutical industry. It is generally accepted that the Peruvian purple maize originated from a single ancestral landrace 'Kculli', but it is not well understood. To study the origin of the Peruvian purple maize, we assembled the plastid genomes of the new cultivar 'INIA 601' with a high concentration of anthocyanins, comparing them with 27 cultivars/landraces of South America, 9
Identifiants
pubmed: 36297753
pii: plants11202727
doi: 10.3390/plants11202727
pmc: PMC9612013
pii:
doi:
Types de publication
Journal Article
Langues
eng
Subventions
Organisme : Programa Nacional de Innovación Agraria - PNIA
ID : R.D. N°013-2015-INIA-PNIA-DE
Organisme : Singaporean Ministry of Education
ID : MOE2018-T2-2-053
Références
Curr Genet. 2017 May;63(2):311-323
pubmed: 27488804
Methods Mol Biol. 2019;1962:1-14
pubmed: 31020551
Genetics. 1999 Jul;152(3):1111-22
pubmed: 10388829
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
Theor Appl Genet. 2007 Aug;115(4):571-90
pubmed: 17534593
Curr Genet. 1985 Mar;9(3):233-8
pubmed: 24173558
Mol Biol Evol. 1999 Aug;16(8):1027-36
pubmed: 10474899
Nucleic Acids Res. 2019 Jul 2;47(W1):W59-W64
pubmed: 30949694
Ann Bot. 2021 Jul 28;128(1):115-125
pubmed: 33693521
Sci Rep. 2019 Nov 7;9(1):16227
pubmed: 31700055
Front Plant Sci. 2016 Nov 29;7:1797
pubmed: 27965698
Ann Bot. 2022 May 12;129(6):737-751
pubmed: 35390119
Am J Bot. 2008 Oct;95(10):1240-53
pubmed: 21632329
PLoS One. 2018 Oct 18;13(10):e0206085
pubmed: 30335843
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11
pubmed: 28486635
Bioinformatics. 2015 Oct 15;31(20):3350-2
pubmed: 26099265
Plant Physiol. 2015 Nov;169(3):2129-37
pubmed: 26336091
Genome Biol Evol. 2017 Apr 1;9(4):904-915
pubmed: 28338960
Syst Biol. 2000 Jun;49(2):306-62
pubmed: 12118410
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
R Soc Open Sci. 2020 Apr 15;7(4):191545
pubmed: 32431864
Science. 2009 Nov 20;326(5956):1112-5
pubmed: 19965430
Genome Biol. 2020 Sep 10;21(1):241
pubmed: 32912315
Proc Natl Acad Sci U S A. 2010 Mar 9;107(10):4623-8
pubmed: 20176954
Genome Biol Evol. 2019 Dec 1;11(12):3372-3381
pubmed: 31750905
Mol Biol Evol. 2016 Jun;33(6):1635-8
pubmed: 26921390
Nat Biotechnol. 2019 May;37(5):540-546
pubmed: 30936562
J Mol Biol. 1995 Sep 1;251(5):614-28
pubmed: 7666415
PLoS Comput Biol. 2018 Jan 26;14(1):e1005944
pubmed: 29373581
Food Res Int. 2020 Apr;130:108934
pubmed: 32156382
Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):6080-4
pubmed: 11983901
Bioinformatics. 2018 Sep 15;34(18):3094-3100
pubmed: 29750242
Mitochondrial DNA B Resour. 2017 Dec 7;2(2):910-912
pubmed: 33474032
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712
Science. 2018 Dec 14;362(6420):1309-1313
pubmed: 30545889