Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection.

COVID-19 SARS-CoV-2 alternative splicing causal mediation differential expression interferon-stimulated genes sex differences viral infection

Journal

Cell systems
ISSN: 2405-4720
Titre abrégé: Cell Syst
Pays: United States
ID NLM: 101656080

Informations de publication

Date de publication:
16 11 2022
Historique:
received: 11 04 2022
revised: 21 07 2022
accepted: 18 10 2022
pubmed: 3 11 2022
medline: 22 11 2022
entrez: 2 11 2022
Statut: ppublish

Résumé

Male sex is a major risk factor for SARS-CoV-2 infection severity. To understand the basis for this sex difference, we studied SARS-CoV-2 infection in a young adult cohort of United States Marine recruits. Among 2,641 male and 244 female unvaccinated and seronegative recruits studied longitudinally, SARS-CoV-2 infections occurred in 1,033 males and 137 females. We identified sex differences in symptoms, viral load, blood transcriptome, RNA splicing, and proteomic signatures. Females had higher pre-infection expression of antiviral interferon-stimulated gene (ISG) programs. Causal mediation analysis implicated ISG differences in number of symptoms, levels of ISGs, and differential splicing of CD45 lymphocyte phosphatase during infection. Our results indicate that the antiviral innate immunity set point causally contributes to sex differences in response to SARS-CoV-2 infection. A record of this paper's transparent peer review process is included in the supplemental information.

Identifiants

pubmed: 36323307
pii: S2405-4712(22)00432-X
doi: 10.1016/j.cels.2022.10.005
pmc: PMC9623453
pii:
doi:

Substances chimiques

Interferons 9008-11-1

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S. Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

924-931.e4

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM071966
Pays : United States

Informations de copyright

Copyright © 2022 The Author(s). Published by Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of interests C.W.G., R.A.L., S.E.L., M.A.S., M.S.T., D.L.W., and A.G.L. are military service members or government service employees. This work was prepared as part of their official duties. Title 17, US Code §105 provides that copyright protection under this title is not available for any work of the US Government. Title 17, US code §101 defines a US Government work as a work prepared by a military service member or employee of the US Government as part of that person’s official duties. The views expressed in the article are those of the authors and do not necessarily express the official policy and position of the US Navy, the Department of Defense, and the US Government or the institutions affiliated with the authors. O.G.T. is on the advisory board of Cell Systems.

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Auteurs

Natalie Sauerwald (N)

Center for Computational Biology, Flatiron Institute, New York, NY 10010, USA.

Zijun Zhang (Z)

Center for Computational Biology, Flatiron Institute, New York, NY 10010, USA.

Irene Ramos (I)

Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Venugopalan D Nair (VD)

Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Alessandra Soares-Schanoski (A)

Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Yongchao Ge (Y)

Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Weiguang Mao (W)

Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA.

Hala Alshammary (H)

Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Ana S Gonzalez-Reiche (AS)

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Adriana van de Guchte (A)

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Carl W Goforth (CW)

Naval Medical Research Center, Silver Spring, MD 20910, USA.

Rhonda A Lizewski (RA)

Naval Medical Research Unit 6, Lima 34031, Peru.

Stephen E Lizewski (SE)

Naval Medical Research Unit 6, Lima 34031, Peru.

Mary Anne S Amper (MAS)

Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Mital Vasoya (M)

Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Nitish Seenarine (N)

Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Kristy Guevara (K)

Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Nada Marjanovic (N)

Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Clare M Miller (CM)

Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

German Nudelman (G)

Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Megan A Schilling (MA)

Naval Medical Research Center, Silver Spring, MD 20910, USA.

Rachel S G Sealfon (RSG)

Center for Computational Biology, Flatiron Institute, New York, NY 10010, USA.

Michael S Termini (MS)

Navy Medicine Readiness and Training Command Beaufort, Beaufort, SC 29902, USA.

Sindhu Vangeti (S)

Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Dawn L Weir (DL)

Naval Medical Research Center, Silver Spring, MD 20910, USA.

Elena Zaslavsky (E)

Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Maria Chikina (M)

Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA.

Ying Nian Wu (YN)

Department of Statistics, University of California, Los Angeles, Los Angeles, CA 90095, USA.

Harm Van Bakel (H)

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Andrew G Letizia (AG)

Naval Medical Research Center, Silver Spring, MD 20910, USA.

Stuart C Sealfon (SC)

Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. Electronic address: stuart.sealfon@mssm.edu.

Olga G Troyanskaya (OG)

Center for Computational Biology, Flatiron Institute, New York, NY 10010, USA; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, USA; Department of Computer Science, Princeton University, Princeton, NJ 08540, USA. Electronic address: ogt@genomics.princeton.edu.

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