Insights into the evolution of enzymatic specificity and catalysis: From Asgard archaea to human adenylate kinases.
Journal
Science advances
ISSN: 2375-2548
Titre abrégé: Sci Adv
Pays: United States
ID NLM: 101653440
Informations de publication
Date de publication:
04 Nov 2022
04 Nov 2022
Historique:
entrez:
4
11
2022
pubmed:
5
11
2022
medline:
9
11
2022
Statut:
ppublish
Résumé
Enzymatic catalysis is critically dependent on selectivity, active site architecture, and dynamics. To contribute insights into the interplay of these properties, we established an approach with NMR, crystallography, and MD simulations focused on the ubiquitous phosphotransferase adenylate kinase (AK) isolated from
Identifiants
pubmed: 36332013
doi: 10.1126/sciadv.abm4089
pmc: PMC9635829
doi:
Substances chimiques
Adenylate Kinase
EC 2.7.4.3
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
eabm4089Références
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):235-42
pubmed: 21460441
EMBO J. 1982;1(8):945-51
pubmed: 6329717
Structure. 2006 Jan;14(1):97-106
pubmed: 16407069
Biochemistry. 2021 Mar 9;60(9):643-647
pubmed: 33428379
Methods Enzymol. 2001;334:469-78
pubmed: 11398484
Philos Trans R Soc Lond B Biol Sci. 2006 Oct 29;361(1474):1809-18
pubmed: 17008220
Nature. 2018 Oct;562(7727):439-443
pubmed: 30283132
Elife. 2015 Dec 14;4:e09410
pubmed: 26653858
Protein Sci. 2013 Apr;22(4):510-5
pubmed: 23389845
Biochemistry. 2020 Sep 29;59(38):3570-3581
pubmed: 32822537
Proc Natl Acad Sci U S A. 1998 Jun 23;95(13):7406-11
pubmed: 9636162
J Biochem. 2020 Sep 1;168(3):223-229
pubmed: 32271910
J Am Chem Soc. 2012 Oct 10;134(40):16562-70
pubmed: 22963267
J Chem Theory Comput. 2021 Nov 9;17(11):6799-6807
pubmed: 34709046
Chem Biol. 1999 Apr;6(4):R91-R105
pubmed: 10099128
Biochemistry. 2021 Jul 20;60(28):2246-2258
pubmed: 34250801
Curr Opin Struct Biol. 2016 Jun;38:37-43
pubmed: 27288744
Chem Rev. 2004 Aug;104(8):3623-40
pubmed: 15303831
ChemSusChem. 2015 Nov;8(22):3764-8
pubmed: 26494201
Nat Methods. 2020 May;17(5):495-503
pubmed: 32284610
PLoS One. 2016 Sep 19;11(9):e0163115
pubmed: 27642758
Science. 1991 Jul 26;253(5018):407-14
pubmed: 1862342
J Mol Biol. 2003 Jul 25;330(5):1087-99
pubmed: 12860130
Nature. 2015 May 14;521(7551):173-179
pubmed: 25945739
Nat Struct Biol. 2001 Nov;8(11):932-5
pubmed: 11685237
J Comput Chem. 2008 Aug;29(11):1859-65
pubmed: 18351591
J Am Chem Soc. 2007 Nov 14;129(45):14003-12
pubmed: 17935333
Mol Aspects Med. 2003 Feb-Jun;24(1-3):3-9
pubmed: 12537985
FEBS Lett. 2021 Aug;595(16):2071-2084
pubmed: 34245011
J Mol Biol. 1998 Sep 11;282(1):167-79
pubmed: 9733648
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501
pubmed: 20383002
J Mol Biol. 1999 Mar 12;286(5):1597-608
pubmed: 10064717
Nature. 1989 Sep 21;341(6239):209-14
pubmed: 2476675
Cell Mol Life Sci. 2003 Apr;60(4):648-62
pubmed: 12785714
Proc Natl Acad Sci U S A. 2005 Jan 11;102(2):303-8
pubmed: 15630091
ACS Chem Biol. 2013 Nov 15;8(11):2388-93
pubmed: 24015933
Int J Biochem Cell Biol. 2014 Apr;49:75-83
pubmed: 24495878
Proteins. 2012 Jan;80(1):206-20
pubmed: 22038794
Nat Rev Microbiol. 2017 Nov 10;15(12):711-723
pubmed: 29123225
Nat Commun. 2015 Jul 03;6:7644
pubmed: 26138143
Nat Struct Mol Biol. 2011 Mar;18(3):316-22
pubmed: 21336276
Curr Opin Cell Biol. 2014 Jun;28:8-15
pubmed: 24508984
Annu Rev Microbiol. 1976;30:409-25
pubmed: 791073
J Theor Biol. 1967 Mar;14(3):255-74
pubmed: 11541392
Biochemistry. 2013 Feb 12;52(6):1055-61
pubmed: 23339454
Chem Commun (Camb). 2012 Nov 7;48(86):10681-3
pubmed: 23000821
J Mol Biol. 1992 Mar 5;224(1):159-77
pubmed: 1548697
Nat Struct Mol Biol. 2004 Oct;11(10):945-9
pubmed: 15334070
Nature. 2017 Jan 19;541(7637):353-358
pubmed: 28077874
J Biol Chem. 2020 Jul 17;295(29):9868-9878
pubmed: 32434931
Nature. 1999 Jun 3;399(6735):496-9
pubmed: 10365965
Nat Commun. 2010 Nov 16;1:111
pubmed: 21081909
Front Microbiol. 2018 Aug 15;9:1896
pubmed: 30158917