Atomistic structure search using local surrogate model.


Journal

The Journal of chemical physics
ISSN: 1089-7690
Titre abrégé: J Chem Phys
Pays: United States
ID NLM: 0375360

Informations de publication

Date de publication:
07 Nov 2022
Historique:
entrez: 8 11 2022
pubmed: 9 11 2022
medline: 9 11 2022
Statut: ppublish

Résumé

We describe a local surrogate model for use in conjunction with global structure search methods. The model follows the Gaussian approximation potential formalism and is based on the smooth overlap of atomic positions descriptor with sparsification in terms of a reduced number of local environments using mini-batch k-means. The model is implemented in the Atomistic Global Optimization X framework and used as a partial replacement of the local relaxations in basin hopping structure search. The approach is shown to be robust for a wide range of atomistic systems, including molecules, nanoparticles, surface supported clusters, and surface thin films. The benefits in a structure search context of a local surrogate model are demonstrated. This includes the ability to benefit from transfer learning from smaller systems as well as the possibility to perform concurrent multi-stoichiometry searches.

Identifiants

pubmed: 36347689
doi: 10.1063/5.0121748
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

174115

Auteurs

Nikolaj Rønne (N)

Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus, Denmark.

Mads-Peter V Christiansen (MV)

Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus, Denmark.

Andreas Møller Slavensky (AM)

Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus, Denmark.

Zeyuan Tang (Z)

Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus, Denmark.

Florian Brix (F)

Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus, Denmark.

Mikkel Elkjær Pedersen (ME)

Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus, Denmark.

Malthe Kjær Bisbo (MK)

Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus, Denmark.

Bjørk Hammer (B)

Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus, Denmark.

Classifications MeSH