Copy Number Variation among Resistance Genes Analogues in
canola
disease resistance
genomic structural variation
oilseed crops
Journal
Genes
ISSN: 2073-4425
Titre abrégé: Genes (Basel)
Pays: Switzerland
ID NLM: 101551097
Informations de publication
Date de publication:
04 11 2022
04 11 2022
Historique:
received:
06
10
2022
revised:
26
10
2022
accepted:
31
10
2022
entrez:
11
11
2022
pubmed:
12
11
2022
medline:
15
11
2022
Statut:
epublish
Résumé
Copy number variations (CNVs) are defined as deletions, duplications and insertions among individuals of a species. There is growing evidence that CNV is a major factor underlining various autoimmune disorders and diseases in humans; however, in plants, especially oilseed crops, the role of CNVs in disease resistance is not well studied. Here, we investigate the genome-wide diversity and genetic properties of CNVs in resistance gene analogues (RGAs) across eight
Identifiants
pubmed: 36360273
pii: genes13112037
doi: 10.3390/genes13112037
pmc: PMC9690292
pii:
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Références
Theor Appl Genet. 2007 Nov;115(7):897-906
pubmed: 17668174
Nat Plants. 2020 Aug;6(8):914-920
pubmed: 32690893
Sci Data. 2017 Mar 14;4:170013
pubmed: 28291231
Genome Biol Evol. 2010 Jul 12;2:441-53
pubmed: 20624746
BMC Biol. 2020 Jun 26;18(1):73
pubmed: 32591023
BMC Genomics. 2010 May 19;11:313
pubmed: 20482863
BMC Plant Biol. 2016 Aug 24;16(1):183
pubmed: 27553246
Genome Biol. 2014 Jun 10;15(6):R77
pubmed: 24916971
Plant Biotechnol J. 2019 Apr;17(4):789-800
pubmed: 30230187
Bioinformatics. 2009 Jul 15;25(14):1754-60
pubmed: 19451168
Plant Cell. 1999 Oct;11(10):1925-34
pubmed: 10521522
Mol Ecol. 2015 Apr;24(8):1774-91
pubmed: 25735447
Plant J. 2012 May;70(4):691-703
pubmed: 22268419
Science. 2002 May 31;296(5573):1697-700
pubmed: 12040198
Plant Biotechnol J. 2019 May;17(5):881-892
pubmed: 30315621
Theor Appl Genet. 2014 Jan;127(1):1-18
pubmed: 23989647
Plant Genome. 2022 Mar;15(1):e20100
pubmed: 34227250
Plant Physiol. 2012 Aug;159(4):1295-308
pubmed: 22696021
Genome Biol. 2006;7(4):212
pubmed: 16677430
Int J Mol Sci. 2015 Aug 14;16(8):19248-90
pubmed: 26287177
Proc Natl Acad Sci U S A. 1990 Nov;87(22):8741-5
pubmed: 2247443
Nat Plants. 2018 Sep;4(9):662-668
pubmed: 30150615
Theor Appl Genet. 2010 Mar;120(5):921-31
pubmed: 19953219
Phytopathology. 2004 Jun;94(6):578-83
pubmed: 18943482
Int J Mol Sci. 2018 Jul 15;19(7):
pubmed: 30011952
PLoS Genet. 2009 Nov;5(11):e1000734
pubmed: 19956538
PLoS One. 2012;7(3):e33234
pubmed: 22457747
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Plant Biol (Stuttg). 2016 Nov;18(6):883-892
pubmed: 27063780
Plant Cell. 2003 Apr;15(4):809-34
pubmed: 12671079
Trends Biotechnol. 2009 Sep;27(9):522-30
pubmed: 19679362
BMC Genomics. 2016 Nov 2;17(1):852
pubmed: 27806688
Plant J. 2016 Oct;88(1):143-153
pubmed: 27310152
Mol Genet Genomics. 2013 Jun;288(5-6):261-75
pubmed: 23591592
BMC Genomics. 2016 Mar 29;17:261
pubmed: 27025496
Genome Biol. 2011 Sep 14;12(9):R88
pubmed: 21917144
Cell. 2020 Jul 9;182(1):145-161.e23
pubmed: 32553272
Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):7949-56
pubmed: 27354512
BMC Genomics. 2016 Nov 8;17(1):893
pubmed: 27825302
Plant Biotechnol J. 2018 Jul;16(7):1265-1274
pubmed: 29205771
BMC Genomics. 2019 Jan 18;20(1):61
pubmed: 30658572
Mol Cells. 2012 Apr;33(4):385-92
pubmed: 22453776
Plant Biotechnol J. 2021 Sep;19(9):1852-1862
pubmed: 33942475
Plant Biotechnol J. 2020 Sep;18(9):1946-1954
pubmed: 32020732
BMC Genomics. 2013 Nov 12;14:782
pubmed: 24219589
Theor Appl Genet. 2016 Jan;129(1):169-80
pubmed: 26518572
Plant Biotechnol J. 2018 Feb 24;:
pubmed: 29476650
Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):5241-6
pubmed: 23479633
Sci Rep. 2017 Feb 06;7:41845
pubmed: 28165502
Genetics. 2006 Feb;172(2):1243-50
pubmed: 16452149
Plant Mol Biol. 2016 Sep;92(1-2):161-75
pubmed: 27338258
G3 (Bethesda). 2021 Jan 18;11(1):
pubmed: 33561242
Plant J. 2017 Feb;89(4):764-773
pubmed: 27859852
Plant Biotechnol J. 2020 Apr;18(4):969-982
pubmed: 31553100
Theor Appl Genet. 2010 Jan;120(2):355-67
pubmed: 19756477
Plant J. 2013 Jul;75(1):80-89
pubmed: 23573982
Sci Data. 2020 Apr 7;7(1):113
pubmed: 32265447
BMC Genomics. 2015 Oct 23;16:843
pubmed: 26492869
Science. 2012 Nov 30;338(6111):1206-9
pubmed: 23065905
Nat Biotechnol. 2011 Dec 11;30(1):105-11
pubmed: 22158310
Neurol Res. 2016 Sep;38(9):775-85
pubmed: 27399248
Bioinformatics. 2011 Nov 1;27(21):2987-93
pubmed: 21903627
Trends Genet. 2020 Feb;36(2):132-145
pubmed: 31882191
Proc Biol Sci. 2010 Nov 7;277(1698):3213-21
pubmed: 20591863
Plant Physiol. 2012 May;159(1):336-54
pubmed: 22457424
Nat Genet. 2018 Feb;50(2):278-284
pubmed: 29335547
Front Plant Sci. 2018 Feb 09;9:110
pubmed: 29479358
Theor Appl Genet. 2012 Jul;125(2):405-18
pubmed: 22454144
Plant Biotechnol J. 2021 Dec;19(12):2488-2500
pubmed: 34310022
Front Plant Sci. 2018 Feb 19;9:21
pubmed: 29515596
Science. 2014 Aug 22;345(6199):950-3
pubmed: 25146293
Plant J. 2017 Jun;90(5):1007-1013
pubmed: 28231383
Cell. 2006 Feb 24;124(4):803-14
pubmed: 16497589
Plant Cell. 2006 Aug;18(8):1803-18
pubmed: 16798885
Plant Cell. 2004 Nov;16(11):2870-94
pubmed: 15494555
PLoS Biol. 2017 Jun 27;15(6):e2001333
pubmed: 28654659
BMC Genomics. 2013 May 17;14:335
pubmed: 23682795
Plant Mol Biol. 2006 Sep;62(1-2):181-93
pubmed: 16915523
Genome Res. 2010 Dec;20(12):1689-99
pubmed: 21036921
Science. 2007 Nov 30;318(5855):1446-9
pubmed: 18048688
Genome Res. 2011 Jun;21(6):974-84
pubmed: 21324876
BMC Genomics. 2011 Jul 20;12:372
pubmed: 21771342
Nature. 2006 Nov 16;444(7117):323-9
pubmed: 17108957
Nat Methods. 2015 Oct;12(10):966-8
pubmed: 26258291
Nucleic Acids Res. 2010 Oct;38(19):6513-25
pubmed: 20542917
Plant Physiol. 2012 May;159(1):197-210
pubmed: 22422941
Cell. 2020 Jul 9;182(1):162-176.e13
pubmed: 32553274
Nat Rev Genet. 2009 Aug;10(8):551-64
pubmed: 19597530
Sci Rep. 2020 Mar 5;10(1):4131
pubmed: 32139810
Genome. 2016 Oct;59(10):805-815
pubmed: 27549861
Trends Genet. 2013 Apr;29(4):225-32
pubmed: 23295340
Plant Genome. 2022 Mar;15(1):e20109
pubmed: 34169673
Plant Cell. 2020 Jun;32(6):1797-1819
pubmed: 32265262
Bioinformatics. 2010 Mar 15;26(6):841-2
pubmed: 20110278
Brief Funct Genomics. 2015 Sep;14(5):352-7
pubmed: 25922366
New Phytol. 2022 Feb;233(4):1548-1555
pubmed: 34328223
Bioinformatics. 2015 Jun 15;31(12):2032-4
pubmed: 25697820
Front Plant Sci. 2021 Apr 08;12:639631
pubmed: 33936130
BMC Bioinformatics. 2009 Dec 15;10:421
pubmed: 20003500
Biomol Detect Quantif. 2018 Apr 09;15:24-29
pubmed: 29922591
Nat Commun. 2016 Nov 11;7:13390
pubmed: 27834372
Nature. 2006 Nov 23;444(7118):444-54
pubmed: 17122850
New Phytol. 2011 Aug;191(3):884-894
pubmed: 21517871