Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB.


Journal

ACS catalysis
ISSN: 2155-5435
Titre abrégé: ACS Catal
Pays: United States
ID NLM: 101562209

Informations de publication

Date de publication:
04 Nov 2022
Historique:
received: 31 07 2022
revised: 05 10 2022
entrez: 11 11 2022
pubmed: 12 11 2022
medline: 12 11 2022
Statut: ppublish

Résumé

Controlling the reactivity of high-valent Fe(IV)-O catalytic intermediates, Compounds I and II, generated in heme enzymes upon reaction with dioxygen or hydrogen peroxide, is important for function. It has been hypothesized that the presence (wet) or absence (dry) of distal heme pocket water molecules can influence whether Compound I undergoes sequential one-electron additions or a concerted two-electron reduction. To test this hypothesis, we investigate the role of water in the heme distal pocket of a dye-decolorizing peroxidase utilizing a combination of serial femtosecond crystallography and rapid kinetic studies. In a dry distal heme site, Compound I reduction proceeds through a mechanism in which Compound II concentration is low. This reaction shows a strong deuterium isotope effect, indicating that reduction is coupled to proton uptake. The resulting protonated Compound II (Fe(IV)-OH) rapidly reduces to the ferric state, giving the appearance of a two-electron transfer process. In a wet site, reduction of Compound I is faster, has no deuterium effect, and yields highly populated Compound II, which is subsequently reduced to the ferric form. This work provides a definitive experimental test of the hypothesis advanced in the literature that relates sequential or concerted electron transfer to Compound I in wet or dry distal heme sites.

Identifiants

pubmed: 36366763
doi: 10.1021/acscatal.2c03754
pmc: PMC9638988
doi:

Types de publication

Journal Article

Langues

eng

Pagination

13349-13359

Informations de copyright

© 2022 The Authors. Published by American Chemical Society.

Déclaration de conflit d'intérêts

The authors declare no competing financial interest.

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Auteurs

Marina Lučić (M)

School of Life Sciences, University of Essex, Wivenhoe Park, Essex, ColchesterCO4 3SQ, U.K.

Michael T Wilson (MT)

School of Life Sciences, University of Essex, Wivenhoe Park, Essex, ColchesterCO4 3SQ, U.K.

Takehiko Tosha (T)

RIKEN, Spring-8 Center, 1-1-1 Kouto, Sayo, Hyogo679-5148Japan.

Hiroshi Sugimoto (H)

RIKEN, Spring-8 Center, 1-1-1 Kouto, Sayo, Hyogo679-5148Japan.

Anastasya Shilova (A)

Diamond Light Source, Harwell Science and Innovation Campus, Oxfordshire, DidcotOX11 0DE, U.K.

Danny Axford (D)

Diamond Light Source, Harwell Science and Innovation Campus, Oxfordshire, DidcotOX11 0DE, U.K.

Robin L Owen (RL)

Diamond Light Source, Harwell Science and Innovation Campus, Oxfordshire, DidcotOX11 0DE, U.K.

Michael A Hough (MA)

School of Life Sciences, University of Essex, Wivenhoe Park, Essex, ColchesterCO4 3SQ, U.K.
Diamond Light Source, Harwell Science and Innovation Campus, Oxfordshire, DidcotOX11 0DE, U.K.

Jonathan A R Worrall (JAR)

School of Life Sciences, University of Essex, Wivenhoe Park, Essex, ColchesterCO4 3SQ, U.K.

Classifications MeSH