DFT insights into the mechanism of O

Biomimetic model complexes Cysteine dioxygenase (CDO) Density functional theory (DFT) Fe(IV)-oxido O(2) activation Tris(2-pyridyl)methane-based ligand

Journal

Journal of inorganic biochemistry
ISSN: 1873-3344
Titre abrégé: J Inorg Biochem
Pays: United States
ID NLM: 7905788

Informations de publication

Date de publication:
01 2023
Historique:
received: 27 07 2022
revised: 26 10 2022
accepted: 03 11 2022
pubmed: 13 11 2022
medline: 26 11 2022
entrez: 12 11 2022
Statut: ppublish

Résumé

Cysteine dioxygenation is an important step in the metabolism of toxic L-cysteine (Cys) in the human body, carried out by cysteine dioxygenase enzyme (CDO). The disruption of this process is found to elicit neurological health issues. This work reports a computational investigation of mechanistic aspects of this reaction, using a recently reported tris(2-pyridyl)methane-based biomimetic model complex of CDO. The computed results indicate that, the initial SO2 bond formation process is the slowest step in the S-dioxygenation process, possessing an activation barrier of 12.7 kcal/mol. The remaining steps were found to be downhill requiring very small activation energies. The transition states were found to undergo spin crossover between triplet and quintet states, while the singlet surface remained unstable throughout the entire reaction. In essence, the mechanistic scheme and multistate reactivity pattern together with the relatively small computed rate-limiting activation barrier as well as the exothermic formation energy demonstrate that the model complex is an efficient biomimetic CDO model. In addition, the study also substantiates the involvement of Fe(IV)oxido intermediates in the mechanism of S-dioxygenation by the chosen model complex. The insights derived from the O

Identifiants

pubmed: 36370503
pii: S0162-0134(22)00355-5
doi: 10.1016/j.jinorgbio.2022.112066
pii:
doi:

Substances chimiques

Cysteine Dioxygenase EC 1.13.11.20
Ligands 0
Cysteine K848JZ4886
Methane OP0UW79H66

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

112066

Informations de copyright

Copyright © 2022 Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Neethinathan Johnee Britto (N)

Department of Chemistry & Computational Chemistry Laboratory, Loyola Institute of Frontier Energy (LIFE), Loyola College, University of Madras, Chennai 600 034, Tamil Nadu, India.

Madhavan Jaccob (M)

Department of Chemistry & Computational Chemistry Laboratory, Loyola Institute of Frontier Energy (LIFE), Loyola College, University of Madras, Chennai 600 034, Tamil Nadu, India. Electronic address: jaccob@loyolacollege.edu.

Peter Comba (P)

Heidelberg University, Anorganisch-Chemisches Institut and Interdisciplinary Center for Scientific Computing, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany. Electronic address: peter.comba@aci.uni-heidelberg.de.

Karunanithi Anandababu (K)

Depatment of Chemistry, Indian Institute of Technology Bhilai, GEC Campus, Sejbahar, Raipur 492015, India.

Ramasamy Mayilmurugan (R)

Depatment of Chemistry, Indian Institute of Technology Bhilai, GEC Campus, Sejbahar, Raipur 492015, India.

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Classifications MeSH