Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis.

brain cancer colon cancer deep learning esophagogastric cancer hyperspectral imaging machine learning median filter min-max scaling standard normal variate normalization

Journal

Sensors (Basel, Switzerland)
ISSN: 1424-8220
Titre abrégé: Sensors (Basel)
Pays: Switzerland
ID NLM: 101204366

Informations de publication

Date de publication:
18 Nov 2022
Historique:
received: 11 10 2022
revised: 10 11 2022
accepted: 15 11 2022
entrez: 26 11 2022
pubmed: 27 11 2022
medline: 30 11 2022
Statut: epublish

Résumé

Currently, one of the most common causes of death worldwide is cancer. The development of innovative methods to support the early and accurate detection of cancers is required to increase the recovery rate of patients. Several studies have shown that medical Hyperspectral Imaging (HSI) combined with artificial intelligence algorithms is a powerful tool for cancer detection. Various preprocessing methods are commonly applied to hyperspectral data to improve the performance of the algorithms. However, there is currently no standard for these methods, and no studies have compared them so far in the medical field. In this work, we evaluated different combinations of preprocessing steps, including spatial and spectral smoothing, Min-Max scaling, Standard Normal Variate normalization, and a median spatial smoothing technique, with the goal of improving tumor detection in three different HSI databases concerning colorectal, esophagogastric, and brain cancers. Two machine learning and deep learning models were used to perform the pixel-wise classification. The results showed that the choice of preprocessing method affects the performance of tumor identification. The method that showed slightly better results with respect to identifing colorectal tumors was Median Filter preprocessing (0.94 of area under the curve). On the other hand, esophagogastric and brain tumors were more accurately identified using Min-Max scaling preprocessing (0.93 and 0.92 of area under the curve, respectively). However, it is observed that the Median Filter method smooths sharp spectral features, resulting in high variability in the classification performance. Therefore, based on these results, obtained with different databases acquired by different HSI instrumentation, the most relevant preprocessing technique identified in this work is Min-Max scaling.

Identifiants

pubmed: 36433516
pii: s22228917
doi: 10.3390/s22228917
pmc: PMC9693077
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Agencia Canaria de Investigación, Innovación y Sociedad de la Información
ID : POC 2014-2020, Eje 3 Tema Prioritario 74 (85%)
Organisme : Spanish Government and European Union
ID : PID2020-116417RB-C42
Organisme : MCIN/AEI/10.13039/501100011033 and the European Union "NextGenerationEU/PRTR"
ID : FJC2020-043474-I

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Auteurs

Beatriz Martinez-Vega (B)

Research Institute for Applied Microelectronics (IUMA), University of Las Palmas de Gran Canaria, 35017 Las Palmas de Gran Canaria, Spain.

Mariia Tkachenko (M)

Innovation Center Computer-Assisted Surgery (ICCAS), University of Leipzig, 04103 Leipzig, Germany.
Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI), University of Leipzig, 04105 Leipzig, Germany.

Marianne Matkabi (M)

Innovation Center Computer-Assisted Surgery (ICCAS), University of Leipzig, 04103 Leipzig, Germany.
Department of Electrical Engineering, Mechanical Engineering and Industrial Engineering, Anhalt University of Applied Science Anhalt, 06366 Köthen, Germany.

Samuel Ortega (S)

Research Institute for Applied Microelectronics (IUMA), University of Las Palmas de Gran Canaria, 35017 Las Palmas de Gran Canaria, Spain.
Nofima, Norwegian Institute of Food Fisheries and Aquaculture Research, NO-9291 Tromsø, Norway.

Himar Fabelo (H)

Research Institute for Applied Microelectronics (IUMA), University of Las Palmas de Gran Canaria, 35017 Las Palmas de Gran Canaria, Spain.
Fundacion Canaria Instituto de Investigación Sanitaria de Canarias (FIISC), 35019 Las Palmas de Gran Canaria, Spain.

Francisco Balea-Fernandez (F)

Research Institute for Applied Microelectronics (IUMA), University of Las Palmas de Gran Canaria, 35017 Las Palmas de Gran Canaria, Spain.
Department of Psychology, Sociology and Social Work, University of Las Palmas de Gran Canaria, 35017 Las Palmas de Gran Canaria, Spain.

Marco La Salvia (M)

Department of Electrical, Computer and Biomedical Engineering, University of Pavia, I-27100 Pavia, Italy.

Emanuele Torti (E)

Department of Electrical, Computer and Biomedical Engineering, University of Pavia, I-27100 Pavia, Italy.

Francesco Leporati (F)

Department of Electrical, Computer and Biomedical Engineering, University of Pavia, I-27100 Pavia, Italy.

Gustavo M Callico (GM)

Research Institute for Applied Microelectronics (IUMA), University of Las Palmas de Gran Canaria, 35017 Las Palmas de Gran Canaria, Spain.

Claire Chalopin (C)

Innovation Center Computer-Assisted Surgery (ICCAS), University of Leipzig, 04103 Leipzig, Germany.

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