The blackgrass genome reveals patterns of non-parallel evolution of polygenic herbicide resistance.
blackgrass (Alopecurus myosuroides)
herbicide resistance
parallel evolution
polygenic trait
quantitative genetics
rapid plant adaptation
weed evolution
weed genomics
Journal
The New phytologist
ISSN: 1469-8137
Titre abrégé: New Phytol
Pays: England
ID NLM: 9882884
Informations de publication
Date de publication:
03 2023
03 2023
Historique:
received:
02
02
2022
accepted:
23
11
2022
pubmed:
3
12
2022
medline:
4
2
2023
entrez:
2
12
2022
Statut:
ppublish
Résumé
Globally, weedy plants are a major constraint to sustainable crop production. Much of the success of weeds rests with their ability to rapidly adapt in the face of human-mediated management of agroecosystems. Alopecurus myosuroides (blackgrass) is a widespread and impactful weed affecting agriculture in Europe. Here we report a chromosome-scale genome assembly of blackgrass and use this reference genome to explore the genomic/genetic basis of non-target site herbicide resistance (NTSR). Based on our analysis of F2 seed families derived from two distinct blackgrass populations with the same NTSR phenotype, we demonstrate that the trait is polygenic and evolves from standing genetic variation. We present evidence that selection for NTSR has signatures of both parallel and non-parallel evolution. There are parallel and non-parallel changes at the transcriptional level of several stress- and defence-responsive gene families. At the genomic level, however, the genetic loci underpinning NTSR are different (non-parallel) between seed families. We speculate that variation in the number, regulation and function of stress- and defence-related gene families enable weedy species to rapidly evolve NTSR via exaptation of genes within large multi-functional gene families. These results provide novel insights into the potential for, and nature of plant adaptation in rapidly changing environments.
Identifiants
pubmed: 36457293
doi: 10.1111/nph.18655
pmc: PMC10108218
doi:
Substances chimiques
Herbicides
0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
1891-1907Subventions
Organisme : NIGMS NIH HHS
ID : P20 GM109094
Pays : United States
Informations de copyright
© 2022 The Authors New Phytologist © 2022 New Phytologist Foundation.
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