Capture-SELEX: Selection Strategy, Aptamer Identification, and Biosensing Application.
DNA and RNA Capture-SELEX
aptamer
biosensing applications
characterization
nucleic acid aptamer
small molecule contaminant
Journal
Biosensors
ISSN: 2079-6374
Titre abrégé: Biosensors (Basel)
Pays: Switzerland
ID NLM: 101609191
Informations de publication
Date de publication:
07 Dec 2022
07 Dec 2022
Historique:
received:
05
11
2022
revised:
26
11
2022
accepted:
29
11
2022
entrez:
23
12
2022
pubmed:
24
12
2022
medline:
27
12
2022
Statut:
epublish
Résumé
Small-molecule contaminants, such as antibiotics, pesticides, and plasticizers, have emerged as one of the substances most detrimental to human health and the environment. Therefore, it is crucial to develop low-cost, user-friendly, and portable biosensors capable of rapidly detecting these contaminants. Antibodies have traditionally been used as biorecognition elements. However, aptamers have recently been applied as biorecognition elements in aptamer-based biosensors, also known as aptasensors. The systematic evolution of ligands by exponential enrichment (SELEX) is an in vitro technique used to generate aptamers that bind their targets with high affinity and specificity. Over the past decade, a modified SELEX method known as Capture-SELEX has been widely used to generate DNA or RNA aptamers that bind small molecules. In this review, we summarize the recent strategies used for Capture-SELEX, describe the methods commonly used for detecting and characterizing small-molecule-aptamer interactions, and discuss the development of aptamer-based biosensors for various applications. We also discuss the challenges of the Capture-SELEX platform and biosensor development and the possibilities for their future application.
Identifiants
pubmed: 36551109
pii: bios12121142
doi: 10.3390/bios12121142
pmc: PMC9776347
pii:
doi:
Substances chimiques
Aptamers, Nucleotide
0
Ligands
0
Antibodies
0
Types de publication
Journal Article
Review
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : Shenzhen Basic Research Project
ID : JCYJ20180507181642811
Organisme : Research Grants Council of the Hong Kong SAR, China Projects
ID : CityU 11100222, CityU 11100421, CityU 11101519, CityU 11100218, N_CityU110/17
Organisme : Croucher Foundation Project
ID : 9509003
Organisme : State Key Laboratory of Marine Pollution Director Discretionary Fund; City University of Hong Kong projects
ID : 7005503, 9667222, 9680261
Références
Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2011 Nov;28(11):1547-60
pubmed: 21834642
ACS Appl Mater Interfaces. 2020 Aug 26;12(34):37845-37850
pubmed: 32706235
J Vet Diagn Invest. 2020 Nov;32(6):767-775
pubmed: 32070230
Anal Biochem. 2022 Dec 1;658:114849
pubmed: 36150472
Nat Rev Drug Discov. 2017 Jun;16(6):440
pubmed: 28450742
Anal Chim Acta. 2021 Sep 22;1179:338837
pubmed: 34535250
Molecules. 2018 Jul 11;23(7):
pubmed: 29997341
J Agric Food Chem. 2017 Mar 1;65(8):1771-1777
pubmed: 28161951
Proteomics Clin Appl. 2012 Dec;6(11-12):563-73
pubmed: 23090891
Talanta. 2021 Jul 1;229:122274
pubmed: 33838776
Bioinformatics. 2007 Nov 1;23(21):2947-8
pubmed: 17846036
Anal Bioanal Chem. 2005 Sep;383(1):83-91
pubmed: 16052344
Talanta. 2017 Jan 1;162:232-240
pubmed: 27837823
Bull Exp Biol Med. 2008 Feb;145(2):240-4
pubmed: 19023979
Talanta. 2023 Jan 15;252:123850
pubmed: 36049339
Methods Mol Biol. 2016;1490:163-76
pubmed: 27665598
Anal Bioanal Chem. 2021 Feb;413(4):1159-1171
pubmed: 33236226
Anal Bioanal Chem. 2021 Jan;413(3):901-909
pubmed: 33184760
Front Biosci (Landmark Ed). 2022 Mar 9;27(3):92
pubmed: 35345324
Dement Geriatr Cogn Dis Extra. 2021 May 7;11(2):110-113
pubmed: 34178014
Clin Chem. 2015 Jan;61(1):21-4
pubmed: 25332311
Molecules. 2018 Nov 30;23(12):
pubmed: 30513671
Nature. 1990 Mar 29;344(6265):467-8
pubmed: 1690861
Anal Bioanal Chem. 2014 Jul;406(19):4637-47
pubmed: 24880870
Anal Biochem. 2016 Nov 15;513:87-92
pubmed: 27612649
Nucleic Acids Res. 2019 May 21;47(9):4883-4895
pubmed: 30957848
Front Bioeng Biotechnol. 2021 Jan 15;8:602659
pubmed: 33520958
J Anal Methods Chem. 2012;2012:415697
pubmed: 23326761
World J Microbiol Biotechnol. 2018 Sep 15;34(10):149
pubmed: 30220026
J Hazard Mater. 2022 Apr 5;427:127939
pubmed: 34893377
Talanta. 2023 Jan 1;251:123739
pubmed: 35931009
Protein Eng Des Sel. 2021 Feb 15;34:
pubmed: 33991088
Anal Chim Acta. 2021 Jun 15;1164:338509
pubmed: 33992220
J Sci Food Agric. 2019 Jan 30;99(2):499-506
pubmed: 30094833
Int J Mol Sci. 2021 Oct 07;22(19):
pubmed: 34639187
Int J Food Microbiol. 2001 Dec 4;71(1):53-61
pubmed: 11764892
Anal Chem. 2011 Nov 1;83(21):8130-7
pubmed: 21923110
Anal Chim Acta. 2017 Apr 8;961:100-105
pubmed: 28224901
Acc Chem Res. 2011 Dec 20;44(12):1329-38
pubmed: 21615107
Sci Rep. 2017 Aug 3;7(1):7179
pubmed: 28775305
Mar Pollut Bull. 2009 Jul;58(7):1052-62
pubmed: 19268314
Anal Chim Acta. 2020 Apr 8;1105:178-186
pubmed: 32138917
Toxins (Basel). 2022 Mar 05;14(3):
pubmed: 35324692
J Chromatogr A. 2009 May 1;1216(18):3941-5
pubmed: 19321172
Appl Environ Microbiol. 2010 Dec;76(23):7881-4
pubmed: 20935124
J Agric Food Chem. 2009 Jul 8;57(13):5971-5
pubmed: 19522498
Int J Mol Sci. 2020 Mar 23;21(6):
pubmed: 32210057
Front Biosci. 2006 Jan 01;11:492-7
pubmed: 16146746
Anal Biochem. 2017 Nov 1;536:16-31
pubmed: 28802648
Biosensors (Basel). 2022 Jul 27;12(8):
pubmed: 36004970
J Fluoresc. 2012 Jul;22(4):1189-99
pubmed: 22534954
Biochemistry. 1973 Oct 9;12(21):4161-70
pubmed: 4795686
Anal Bioanal Chem. 2016 Jun;408(15):4151-8
pubmed: 27052777
Analyst. 2014 Mar 21;139(6):1550-61
pubmed: 24496116
Anal Chem. 2013 Feb 5;85(3):1525-30
pubmed: 23234289
Front Microbiol. 2021 Jun 15;12:696181
pubmed: 34211452
Biomed Res Int. 2018 Feb 22;2018:1750368
pubmed: 29682520
Science. 1990 Aug 3;249(4968):505-10
pubmed: 2200121
Anal Biochem. 2019 Mar 1;568:7-13
pubmed: 30582897
Curr Protoc Mol Biol. 2018 Apr;122(1):e59
pubmed: 29851291
Anal Biochem. 2019 Jan 1;564-565:40-46
pubmed: 30339811
Biosens Bioelectron. 2021 Jun 1;181:113157
pubmed: 33756378
Toxicon. 2016 Mar 15;112:68-76
pubmed: 26829651
Biochem Biophys Res Commun. 2019 Feb 19;509(4):937-942
pubmed: 30648555
Biotechnol Adv. 2019 Jan - Feb;37(1):28-50
pubmed: 30408510
J Comput Aided Mol Des. 2011 Jul;25(7):669-76
pubmed: 21660516
Anal Biochem. 1999 Dec 1;276(1):59-64
pubmed: 10585744
Int J Mol Sci. 2021 Mar 30;22(7):
pubmed: 33808496
J Vis Exp. 2018 Aug 30;(138):
pubmed: 30222156
Front Cell Infect Microbiol. 2018 Feb 26;8:60
pubmed: 29535978
Nucleic Acids Res. 2003 Jul 1;31(13):3406-15
pubmed: 12824337
Chem Commun (Camb). 2011 Jan 21;47(3):961-3
pubmed: 21079843
Chemosphere. 2019 Feb;216:805-811
pubmed: 30396141
Int J Environ Res Public Health. 2018 Jul 20;15(7):
pubmed: 30036953
Environ Int. 2022 Jan;158:106903
pubmed: 34601394
Analyst. 2015 Sep 7;140(17):5992-7
pubmed: 26181902
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W605-10
pubmed: 15980546
ACS Comb Sci. 2015 May 11;17(5):326-33
pubmed: 25875077
J Phys Chem B. 2006 Aug 17;110(32):15700-7
pubmed: 16898714
Nature. 1990 Aug 30;346(6287):818-22
pubmed: 1697402
J Am Chem Soc. 2008 Mar 19;130(11):3610-8
pubmed: 18293985
Mayo Clin Proc. 1999 Jun;74(6):613-34
pubmed: 10377939
Front Microbiol. 2020 Oct 16;11:588545
pubmed: 33193247
Biomaterials. 2022 Jun 10;287:121617
pubmed: 35728408
ACS Omega. 2018 Oct 31;3(10):13576-13583
pubmed: 30411044
Mikrochim Acta. 2017 Dec 2;185(1):3
pubmed: 29594590
Environ Sci Technol. 2020 Aug 18;54(16):10181-10190
pubmed: 32678582
Microbiol Spectr. 2018 Aug;6(4):
pubmed: 30084346
Clin Chem. 2021 Dec 30;68(1):52-58
pubmed: 34969115
Anal Bioanal Chem. 2022 Feb;414(4):1609-1622
pubmed: 34783880
Talanta. 2021 Feb 1;223(Pt 1):121690
pubmed: 33303143
Methods Mol Biol. 2016;1351:223-31
pubmed: 26530686
Nucleic Acids Res. 2018 May 4;46(8):e43
pubmed: 29361056
Anal Bioanal Chem. 2015 Sep;407(23):6965-73
pubmed: 25863801
Curr Protoc Bioinformatics. 2014 Dec 12;48:3.13.1-3.13.16
pubmed: 25501942
Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7
pubmed: 271968
Oncol Lett. 2019 Jul;18(1):265-274
pubmed: 31289496
Molecules. 2020 Feb 09;25(3):
pubmed: 32050451
Biosens Bioelectron. 2016 Apr 15;78:259-266
pubmed: 26623510
Biosens Bioelectron. 2019 Jun 1;134:123-129
pubmed: 30986614
Science. 1994 Mar 11;263(5152):1425-9
pubmed: 7510417
Toxicol Rev. 2005;24(2):93-106
pubmed: 16180929
Anal Chim Acta. 2019 Nov 12;1081:168-175
pubmed: 31446954
Drug Metab Dispos. 2011 Dec;39(12):2355-60
pubmed: 21937735
Anal Methods. 2021 Jul 21;13(27):3110-3117
pubmed: 34156053
Molecules. 2013 Jun 13;18(6):6936-51
pubmed: 23765232
Annu Rev Genomics Hum Genet. 2016 Aug 31;17:95-115
pubmed: 27362342
J Agric Food Chem. 2021 Dec 8;69(48):14671-14679
pubmed: 34809428
Arch Toxicol. 2016 Jun;90(6):1281-92
pubmed: 27034246
Int J Mol Sci. 2021 Sep 17;22(18):
pubmed: 34576207
J Agric Food Chem. 2018 Nov 14;66(45):12102-12110
pubmed: 30346760
Asian Pac J Cancer Prev. 2021 Jul 01;22(7):2209-219
pubmed: 34319045
J Biotechnol. 2022 Aug 10;354:10-20
pubmed: 35700936
J Mol Graph Model. 2021 Jun;105:107872
pubmed: 33765525
Talanta. 2016 Jul 1;154:498-503
pubmed: 27154706
Biotechnol Lett. 2012 May;34(5):869-74
pubmed: 22261866
ACS Appl Mater Interfaces. 2021 Mar 3;13(8):9306-9315
pubmed: 33030015
Anal Biochem. 2017 Nov 1;536:36-44
pubmed: 28818557
Exp Parasitol. 2009 Feb;121(2):144-50
pubmed: 19017530
Anal Chim Acta. 2020 Mar 8;1101:149-156
pubmed: 32029106
Electrophoresis. 1998 Oct;19(14):2416-8
pubmed: 9820960
Anal Chim Acta. 2022 Sep 15;1226:340289
pubmed: 36068048
Methods Mol Biol. 2019;1893:257-272
pubmed: 30565139
Anal Biochem. 2020 Oct 15;607:113898
pubmed: 32777266
Sci Rep. 2021 Jan 26;11(1):2224
pubmed: 33500453
Anal Chem. 2021 Nov 9;93(44):14810-14819
pubmed: 34697940
Sci Total Environ. 2021 Jun 10;772:145389
pubmed: 33578171
Nucleic Acids Res. 2018 Feb 28;46(4):2121-2132
pubmed: 29346617
Anal Bioanal Chem. 2021 Aug;413(19):4855-4863
pubmed: 34110440
Mol Ther Nucleic Acids. 2018 Mar 2;10:187-198
pubmed: 29499932
Biosens Bioelectron. 2016 Mar 15;77:1039-47
pubmed: 26547431
Andrologia. 2016 Jun;48(5):491-500
pubmed: 26264430
Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2020 May;37(5):815-830
pubmed: 32077803
Bioelectrochemistry. 2021 Feb;137:107634
pubmed: 32882443
Theranostics. 2021 Mar 5;11(11):5174-5196
pubmed: 33859741
Sci Total Environ. 2022 Feb 10;807(Pt 3):151879
pubmed: 34826476
Foods. 2022 Jun 29;11(13):
pubmed: 35804807
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W202-8
pubmed: 19458158
Int J Biol Macromol. 2019 May 15;129:91-97
pubmed: 30738156
Environ Sci Technol. 2022 Feb 1;56(3):1482-1488
pubmed: 34995444
Guang Pu Xue Yu Guang Pu Fen Xi. 1997 Aug;17(4):55-9
pubmed: 15806767