Deconvolution of 1D NMR spectra: A deep learning-based approach.

Deconvolution Deep learning Machine learning NMR Spectroscopy

Journal

Journal of magnetic resonance (San Diego, Calif. : 1997)
ISSN: 1096-0856
Titre abrégé: J Magn Reson
Pays: United States
ID NLM: 9707935

Informations de publication

Date de publication:
Feb 2023
Historique:
received: 21 10 2022
revised: 01 12 2022
accepted: 04 12 2022
pubmed: 24 12 2022
medline: 24 12 2022
entrez: 23 12 2022
Statut: ppublish

Résumé

The analysis of nuclear magnetic resonance (NMR) spectra to detect peaks and characterize their parameters, often referred to as deconvolution, is a crucial step in the quantification, elucidation, and verification of the structure of molecular systems. However, deconvolution of 1D NMR spectra is a challenge for both experts and machines. We propose a robust, expert-level quality deep learning-based deconvolution algorithm for 1D experimental NMR spectra. The algorithm is based on a neural network trained on synthetic spectra. Our customized pre-processing and labeling of the synthetic spectra enable the estimation of critical peak parameters. Furthermore, the neural network model transfers well to the experimental spectra and demonstrates low fitting errors and sparse peak lists in challenging scenarios such as crowded, high dynamic range, shoulder peak regions as well as broad peaks. We demonstrate in challenging spectra that the proposed algorithm is superior to expert results.

Identifiants

pubmed: 36563418
pii: S1090-7807(22)00215-4
doi: 10.1016/j.jmr.2022.107357
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

107357

Informations de copyright

Copyright © 2022 The Author(s). Published by Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: All authors except Jan Dirk Wegner, Roland Sigel and Helmut Grabner report financial support was provided by Innosuisse Swiss Innovation Agency. All authors from Bruker Switzerland AG report a relationship with Bruker BioSpin AG that includes: employment.

Auteurs

N Schmid (N)

Zurich University of Applied Sciences (ZHAW), Switzerland; University of Zurich (UZH), Switzerland. Electronic address: scdn@zhaw.ch.

S Bruderer (S)

Bruker Switzerland AG, Switzerland.

F Paruzzo (F)

Bruker Switzerland AG, Switzerland.

G Fischetti (G)

Ca' Foscari University of Venice, Italy.

G Toscano (G)

Bruker Switzerland AG, Switzerland.

D Graf (D)

Bruker Switzerland AG, Switzerland.

M Fey (M)

Bruker Switzerland AG, Switzerland.

A Henrici (A)

Zurich University of Applied Sciences (ZHAW), Switzerland.

V Ziebart (V)

Zurich University of Applied Sciences (ZHAW), Switzerland.

B Heitmann (B)

Bruker Switzerland AG, Switzerland.

H Grabner (H)

Zurich University of Applied Sciences (ZHAW), Switzerland.

J D Wegner (JD)

University of Zurich (UZH), Switzerland.

R K O Sigel (RKO)

University of Zurich (UZH), Switzerland.

D Wilhelm (D)

Zurich University of Applied Sciences (ZHAW), Switzerland.

Classifications MeSH