Invited review: Reliability computation from the animal model era to the single-step genomic model era.


Journal

Journal of dairy science
ISSN: 1525-3198
Titre abrégé: J Dairy Sci
Pays: United States
ID NLM: 2985126R

Informations de publication

Date de publication:
Mar 2023
Historique:
received: 05 08 2022
accepted: 07 11 2022
pubmed: 26 12 2022
medline: 3 3 2023
entrez: 25 12 2022
Statut: ppublish

Résumé

The calculation of exact reliabilities involving the inversion of mixed model equations poses a heavy computational challenge when the system of equations is large. This has prompted the development of different approximation methods. We give an overview of the various methods and computational approaches in calculating reliability from the era before the animal model to the era of single-step genomic models. The different methods are discussed in terms of modeling, development, and applicability in large dairy cattle populations. The paper also describes the problems faced in reliability computation. Many details dispersed throughout the literature are presented in this paper. It is clear that a universal solution applicable to every model and input data may not be possible, but we point out several efficient and accurate algorithms developed recently for a variety of very large genomic evaluations.

Identifiants

pubmed: 36567247
pii: S0022-0302(22)00752-4
doi: 10.3168/jds.2022-22629
pii:
doi:

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

1518-1532

Informations de copyright

The Authors. Published by Elsevier Inc. and Fass Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

Auteurs

Hafedh Ben Zaabza (H)

Department of Animal and Veterinary Sciences, University of Vermont, Burlington 05405; Animal Improvement Programs Laboratory, Agricultural Research Service, US Department of Agriculture, Beltsville, MD 20705-2350. Electronic address: Hafedh.Ben-Zaabza@uvm.edu.

Curtis P Van Tassell (CP)

Animal Improvement Programs Laboratory, Agricultural Research Service, US Department of Agriculture, Beltsville, MD 20705-2350.

Jeremie Vandenplas (J)

Animal Breeding and Genomics, Wageningen University & Research, P.O. Box 338, 6700 AH, Wageningen, the Netherlands.

Paul VanRaden (P)

Animal Improvement Programs Laboratory, Agricultural Research Service, US Department of Agriculture, Beltsville, MD 20705-2350.

Zengting Liu (Z)

IT Solutions for Animal Production (vit), Heinrich-Schröder-Weg 1, D-27283 Verden, Germany.

Herwin Eding (H)

CRV BV, Wassenaarweg, 20, 6843 NW, Arnhem, the Netherlands.

Stephanie McKay (S)

Department of Animal and Veterinary Sciences, University of Vermont, Burlington 05405.

Katrine Haugaard (K)

Interbull Centre, SLU, Box 7023, S-75007 Uppsala, Sweden.

Martin H Lidauer (MH)

Natural Resources Institute Finland (Luke), FI-31600 Jokioinen, Finland.

Esa A Mäntysaari (EA)

Natural Resources Institute Finland (Luke), FI-31600 Jokioinen, Finland.

Ismo Strandén (I)

Natural Resources Institute Finland (Luke), FI-31600 Jokioinen, Finland.

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