Sequence, Secondary Structure, and Phylogenetic Conservation of MicroRNAs in
Arabidopsis thaliana
Oryza sativa
Solanum lycopersicum
miRNAs
phylogenetic analysis
Journal
Bioinformatics and biology insights
ISSN: 1177-9322
Titre abrégé: Bioinform Biol Insights
Pays: United States
ID NLM: 101467187
Informations de publication
Date de publication:
2022
2022
Historique:
received:
19
05
2022
accepted:
09
11
2022
entrez:
26
12
2022
pubmed:
27
12
2022
medline:
27
12
2022
Statut:
epublish
Résumé
MicroRNAs are small non-coding RNA molecules that are produced in a cell endogenously. They are made up of 18 to 26 nucleotides in strength. Due to their evolutionary conserved nature, most of the miRNAs provide a logical basis for the prediction of novel miRNAs and their clusters in plants such as sunflowers related to the Asteraceae family. In addition, they participate in different biological processes of plants, including cell signaling and metabolism, development, growth, and tolerance to (biotic and abiotic) stresses. In this study profiling, conservation and characterization of novel miRNA possessing conserved nature in various plants and their targets annotation in sunflower (Asteraceae) were obtained by using various computational tools and software. As a result, we looked at 152 microRNAs in
Identifiants
pubmed: 36570328
doi: 10.1177/11779322221142116
pii: 10.1177_11779322221142116
pmc: PMC9768830
doi:
Types de publication
Journal Article
Langues
eng
Pagination
11779322221142116Informations de copyright
© The Author(s) 2022.
Déclaration de conflit d'intérêts
The author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
Références
Trends Plant Sci. 2013 Nov;18(11):633-43
pubmed: 23910452
BMC Plant Biol. 2017 Nov 21;17(1):212
pubmed: 29157210
PLoS One. 2012;7(3):e33040
pubmed: 22479356
J Agric Food Chem. 2013 Sep 4;61(35):8277-86
pubmed: 23551250
Genomics. 2022 Jan;114(1):409-442
pubmed: 34954000
RNA Biol. 2015;12(7):709-19
pubmed: 26016494
J Plant Res. 2011 Jul;124(4):437-53
pubmed: 21416316
Viruses. 2015 Feb 17;7(2):820-43
pubmed: 25690800
Curr Opin Plant Biol. 2004 Oct;7(5):512-20
pubmed: 15337093
Genom Data. 2015 Sep 09;6:139-44
pubmed: 26697356
J Cell Physiol. 2007 Feb;210(2):279-89
pubmed: 17096367
Mol Biol Rep. 2012 Mar;39(3):2523-32
pubmed: 21670966