Structural Analyses of the Glycolipids in Lipid Rafts.


Journal

Methods in molecular biology (Clifton, N.J.)
ISSN: 1940-6029
Titre abrégé: Methods Mol Biol
Pays: United States
ID NLM: 9214969

Informations de publication

Date de publication:
2023
Historique:
entrez: 31 12 2022
pubmed: 1 1 2023
medline: 4 1 2023
Statut: ppublish

Résumé

Lipid rafts are usually isolated from cells or tissues using sucrose gradient ultracentrifugation in the presence of detergents such as Triton X-100 at 4 °C. Although detergents should be removed for further structural characterization following fractionation, these compounds are often difficult to completely remove, especially from the glycolipids. In this chapter, we describe a novel method for the fast and convenient removal of detergents from lipid raft glycolipids following fraction and describe the application of this method.

Identifiants

pubmed: 36587077
doi: 10.1007/978-1-0716-2910-9_12
doi:

Substances chimiques

Glycolipids 0
Detergents 0
Octoxynol 9002-93-1

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

145-152

Informations de copyright

© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Références

Miller JM, Joshi C, Sharma P, Baskaran A, Baskaran A, Grason GM et al (2019) Conformational switching of chiral colloidal rafts regulates raft-raft attractions and repulsions. Proc Natl Acad Sci U S A 116:15792–15801
doi: 10.1073/pnas.1900615116
Hirama T, Lu SM, Kay JG, Maekawa M, Kozlov MM, Grinstein S et al (2017) Membrane curvature induced by proximity of anionic phospholipids can initiate endocytosis. Nat Commun 8:1393
doi: 10.1038/s41467-017-01554-9
Schoch RL, Brown FLH, Haran G (2021) Correlated diffusion in lipid bilayers. Proc Natl Acad Sci U S A 118:e2113202118
doi: 10.1073/pnas.2113202118
Jan Akhunzada M, D’Autilia F, Chandramouli B, Bhattacharjee N, Catte A, Di Rienzo R et al (2019) Interplay between lipid lateral diffusion, dye concentration and membrane permeability unveiled by a combined spectroscopic and computational study of a model lipid bilayer. Sci Rep 9:1508
doi: 10.1038/s41598-018-37814-x
Raghunathan K, Kenworthy AK (2018) Dynamic pattern generation in cell membranes: current insights into membrane organization. Biochim Biophys Acta Biomembr 1860:2018–2031
doi: 10.1016/j.bbamem.2018.05.002
Komura N, Suzuki KG, Ando H, Konishi M, Koikeda M, Imamura A et al (2016) Raft-based interactions of gangliosides with a GPI-anchored receptor. Nat Chem Biol 12:402–410
doi: 10.1038/nchembio.2059
Diaz-Rohrer BB, Levental KR, Simons K, Levental I (2014) Membrane raft association is a determinant of plasma membrane localization. Proc Natl Acad Sci U S A 111:8500–8505
doi: 10.1073/pnas.1404582111
Aizaki H, Lee KJ, Sung VM, Ishiko H, Lai MM (2004) Characterization of the hepatitis C virus RNA replication complex associated with lipid rafts. Virology 324:450–461
doi: 10.1016/j.virol.2004.03.034
Cho YY, Kwon OH, Park MK, Kim TW, Chung S (2019) Elevated cellular cholesterol in Familial Alzheimer's presenilin 1 mutation is associated with lipid raft localization of beta-amyloid precursor protein. PLoS One 14:e0210535
doi: 10.1371/journal.pone.0210535
Casadei BR, De Oliveira Carvalho P, Riske KA, Barbosa Rde M, De Paula E, Domingues CC (2014) Brij detergents reveal new aspects of membrane microdomain in erythrocytes. Mol Membr Biol 31:195–205
doi: 10.3109/09687688.2014.949319
Schuck S, Honsho M, Ekroos K, Shevchenko A, Simons K (2003) Resistance of cell membranes to different detergents. Proc Natl Acad Sci U S A 100:5795–5800
doi: 10.1073/pnas.0631579100
Macdonald JL, Pike LJ (2005) A simplified method for the preparation of detergent-free lipid rafts. J Lipid Res 46:1061–1067
doi: 10.1194/jlr.D400041-JLR200
Waugh MG, Chu KM, Clayton EL, Minogue S, Hsuan JJ (2011) Detergent-free isolation and characterization of cholesterol-rich membrane domains from trans-Golgi network vesicles. J Lipid Res 52:582–589
doi: 10.1194/jlr.D012807
Kennedy C, Nelson MD, Bamezai AK (2011) Analysis of detergent-free lipid rafts isolated from CD4+ T cell line: interaction with antigen presenting cells promotes coalescing of lipid rafts. Cell Commun Signal 9:31
doi: 10.1186/1478-811X-9-31
Gu RX, Baoukina S, Tieleman DP (2020) Phase separation in atomistic simulations of model membranes. J Am Chem Soc 142:2844–2856
doi: 10.1021/jacs.9b11057
Ghysels A, Kramer A, Venable RM, Teague WE Jr, Lyman E, Gawrisch K et al (2019) Permeability of membranes in the liquid ordered and liquid disordered phases. Nat Commun 10:5616
doi: 10.1038/s41467-019-13432-7
Tao J, Yu X, Guo Y, Wang G, Ju H, Ding L (2020) Proximity enzymatic glyco-remodeling enables direct and highly efficient lipid raft imaging on live cells. Anal Chem 92:7232–7239
doi: 10.1021/acs.analchem.0c00810
Yeung YG, Stanley ER (2010) Rapid detergent removal from peptide samples with ethyl acetate for mass spectrometry analysis. Curr Protoc Protein Sci Chapter 16:Unit 16.12
Rey M, Mrazek H, Pompach P, Novak P, Pelosi L, Brandolin G et al (2010) Effective removal of nonionic detergents in protein mass spectrometry, hydrogen/deuterium exchange, and proteomics. Anal Chem 82:5107–5116
doi: 10.1021/ac100171m
Yeung YG, Nieves E, Angeletti RH, Stanley ER (2008) Removal of detergents from protein digests for mass spectrometry analysis. Anal Biochem 382:135–137
doi: 10.1016/j.ab.2008.07.034
Suzuki Y, Kabayama K (2012) Convenient and rapid removal of detergent from glycolipids in detergent-resistant membrane microdomains. J Lipid Res 53:599–608
doi: 10.1194/jlr.D020545
Kojima H, Suzuki Y, Ito M, Kabayama K (2015) Structural characterization of neutral glycosphingolipids from 3T3-L1 adipocytes. Lipids 50:913–917
doi: 10.1007/s11745-015-4035-7
Hisashi K, Yusuke S, Anila M, Kazuya K, Kojima H, Yasunori K (2013) Simple and rapid removal of the interference in gangliosides extracted from HPTLC spot on MALDI-TOF MS analysis. Anal Methods 5:6617–6621
doi: 10.1039/c3ay41011k
Matsushita S, Hasegawa T, Hiraoka M, Hayashi A, Suzuki Y (2021) TLC-based MS imaging analysis of glycosphingolipids and glycerin fatty acid esters after 1,2-dichloroethane washing. Anal Sci 37:1491–1495
doi: 10.2116/analsci.21C009

Auteurs

Yusuke Suzuki (Y)

Department of Materials and Applied Chemistry, College of Science and Technology, Nihon University, Tokyo, Japan. suzuki.yuusuke@nihon-u.ac.jp.

Kazuya Kabayama (K)

Department of Chemistry, Graduate School of Science, Osaka University, Osaka, Japan.

Articles similaires

Inclusion Bodies Solubility Recombinant Proteins Detergents Protein Denaturation
Corynebacterium Female Humans Granulomatous Mastitis Glycolipids

Saponin Molecules from Quinoa Residues: Exploring Their Surfactant, Emulsifying, and Detergent Properties.

Kiara A García Bustos, Salvador Sanchez Muñoz, Silvio S da Silva et al.
1.00
Chenopodium quinoa Saponins Surface-Active Agents Detergents Surface Tension
Humans Staphylococcus aureus Membrane Microdomains Hemolysin Proteins Caveolin 1

Classifications MeSH