Machine learning concepts applied to oral pathology and oral medicine: A convolutional neural networks' approach.

artificial intelligence artificial neural network deep learning oral cancer supervised learning

Journal

Journal of oral pathology & medicine : official publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology
ISSN: 1600-0714
Titre abrégé: J Oral Pathol Med
Pays: Denmark
ID NLM: 8911934

Informations de publication

Date de publication:
Feb 2023
Historique:
revised: 05 12 2022
received: 28 10 2022
accepted: 15 12 2022
pubmed: 5 1 2023
medline: 25 2 2023
entrez: 4 1 2023
Statut: ppublish

Résumé

Artificial intelligence models and networks can learn and process dense information in a short time, leading to an efficient, objective, and accurate clinical and histopathological analysis, which can be useful to improve treatment modalities and prognostic outcomes. This paper targets oral pathologists, oral medicinists, and head and neck surgeons to provide them with a theoretical and conceptual foundation of artificial intelligence-based diagnostic approaches, with a special focus on convolutional neural networks, the state-of-the-art in artificial intelligence and deep learning. The authors conducted a literature review, and the convolutional neural network's conceptual foundations and functionality were illustrated based on a unique interdisciplinary point of view. The development of artificial intelligence-based models and computer vision methods for pattern recognition in clinical and histopathological image analysis of head and neck cancer has the potential to aid diagnosis and prognostic prediction.

Identifiants

pubmed: 36599081
doi: 10.1111/jop.13397
doi:

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

109-118

Subventions

Organisme : The Coordination for the Improvement of Higher Education Personnel (CAPES/PROEX)
ID : 001
Organisme : The National Council for Scientific and Technological Development (CNPq)
Organisme : The Program for Institutional Internationalization (CAPES-PrInt)
ID : 88887.369713/2019-00
Organisme : The São Paulo Research Foundation (FAPESP)
ID : 2009/53839-2
Organisme : The São Paulo Research Foundation (FAPESP)
ID : 2021/14585-7
Organisme : Fundo de Apoio ao Ensino, à Pesquisa e Extensão, Universidade Estadual de Campinas (FAEPEX)
ID : 2597/21

Informations de copyright

© 2023 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Références

Krohn J, Beyleveld G, Bassens A. Deep Learning Illustrated: A Visual, Interactive Guide to Artificial Intelligence. 2019. ISBN 10:0135121728; 13: 9780135121726.
Zhang A, Lipton ZC, Li M, Smola AJ. Dive into Deep Learning. 2021. doi: 10.48550/arXiv.2106.11342
Mahmood H, Shaban M, Indave BI, Santos-Silva AR, Rajpoot N, Khurram SA. Use of artificial intelligence in diagnosis of head and neck precancerous and cancerous lesions: a systematic review. Oral Oncol. 2020;110:104885. doi:10.1016/j.oraloncology.2020.104885
McCulloch WS, Pitts W. A logical calculus of the ideas immanent in nervous activity. Bull Math Biol. 1990;52(1-2):99-115. discussion 73-97.
Rosenblatt F. The perceptron: a probabilistic model for information storage and organization in the brain. Psychol Rev. 1958;65(6):386-408. doi:10.1037/h0042519
Zaheer R, Shaziya H. A study of the optimization algorithms in deep learning. Paper presented at the Third International Conference on Inventive Systems and Control (ICISC). 2019:536-539. doi: 10.1109/ICISC44355.2019.9036442
Coudray N, Ocampo PS, Sakellaropoulos T, et al. Classification and mutation prediction from non-small cell lung cancer histopathology images using deep learning. Nat Med. 2018;24(10):1559-1567. doi:10.1038/s41591-018-0177-5
Kubach J, Muhlebner-Fahrngruber A, Soylemezoglu F, et al. Same but different: a web-based deep learning application revealed classifying features for the histopathologic distinction of cortical malformations. Epilepsia. 2020;61(3):421-432. doi:10.1111/epi.16447
Muthu Rama Krishnan M, Pal M, Bomminayuni SK, et al. Automated classification of cells in sub-epithelial connective tissue of oral sub-mucous fibrosis-an SVM based approach. Comput Biol Med. 2009;39(12):1096-1104. doi:10.1016/j.compbiomed.2009.09.004
Muthu Rama Krishnan M, Choudhary A, Chakraborty C, Ray AK, Paul RR. Texture based segmentation of epithelial layer from oral histological images. Micron. 2011;42(6):632-641. doi:10.1016/j.micron.2011.03.003
Krishnan MM, Acharya UR, Chakraborty C, Ray AK. Automated diagnosis of oral cancer using higher order spectra features and local binary pattern: a comparative study. Technol Cancer Res Treat. 2011;10(5):443-455. doi:10.7785/tcrt.2012.500221
Krishnan MM, Venkatraghavan V, Acharya UR, et al. Automated oral cancer identification using histopathological images: a hybrid feature extraction paradigm. Micron. 2012;43(2-3):352-364. doi:10.1016/j.micron.2011.09.016
Muthu Rama Krishnan M, Shah P, Chakraborty C, Ray AK. Statistical analysis of textural features for improved classification of oral histopathological images. J Med Syst. 2012;36(2):865-881. doi:10.1007/s10916-010-9550-8
Shaban M, Khurram SA, Fraz MM, et al. A novel digital score for abundance of tumour infiltrating lymphocytes predicts disease free survival in oral squamous cell carcinoma. Sci Rep. 2019;9(1):13341. doi:10.1038/s41598-019-49710-z
Fraz MM, Shaban M, Graham S, Khurram SA, Rajpoot NM. Uncertainty driven pooling network for microvessel segmentation in routine histology images. Computational Pathology and Ophthalmic Medical Image Analysis. OMIA COMPAY 2018. Lecture Notes in Computer Science. Vol 11039. Springer International Publishing; 2018:156-164. doi:10.1007/978-3-030-00949-6_19
Shamim MZM, Syed S, Shiblee M, Usman M, Ali S. Automated detection of oral pre-cancerous tongue lesions using deep learning for early diagnosis of oral cavity cancer. Comput J. 2020;65(1):91-104. doi:10.1093/comjnl/bxaa136
Sher DJ, Godley A, Park Y, et al. Prospective study of artificial intelligence-based decision support to improve head and neck radiotherapy plan quality. Clin Transl Radiat Oncol. 2021;29:65-70. doi:10.1016/j.ctro.2021.05.006
Kearney V, Chan JW, Valdes G, Solberg TD, Yom SS. The application of artificial intelligence in the IMRT planning process for head and neck cancer. Oral Oncol. 2018;87:111-116.
Camalan S, Mahmood H, Binol H, et al. Convolutional neural network-based clinical predictors of oral dysplasia: class activation map analysis of deep learning results. Cancers. 2021;13(6):1291. doi:10.3390/cancers13061291
Jubair F, Al-Karadsheh O, Malamos D, Al Mahdi S, Saad Y, Hassona Y. A novel lightweight deep convolutional neural network for early detection of oral cancer. Oral Dis. 2022;28:1123-1130. doi:10.1111/odi.13825
Tanriver G, Soluk Tekkesin M, Ergen O. Automated detection and classification of oral lesions using deep learning to detect oral potentially malignant disorders. Cancers. 2021;13(11):2766. doi:10.3390/cancers13112766
Fu Q, Chen Y, Li Z, et al. A deep learning algorithm for detection of oral cavity squamous cell carcinoma from photographic images: a retrospective study. EClinicalMedicine. 2020;23(27):100558. doi:10.1016/j.eclinm.2020.100558
Marée R. The need for careful data collection for pattern recognition in digital pathology. J Pathol Inform. 2017;10(8):19. doi:10.4103/jpi.jpi_94_16
Somaratne U, Wong KW, Parry J, Sohel F, Wang X, Laga H. Improving follicular lymphoma identification using the class of interest for transfer learning. 2019 Digital Image Computing: Techniques and Applications (DICTA). 2019:1-7. doi: 10.1109/DICTA47822.2019.8946075
Komura D, Ishikawa S. Machine learning methods for histopathological image analysis. Comput Struct Biotechnol J. 2018;9(16):34-42. doi:10.1016/j.csbj.2018.01.001
Mercan E, Aksoy S, Shapiro LG, Weaver DL, Brunyé TT, Elmore JG. Localization of diagnostically relevant regions of interest in whole slide images: a comparative study. J Digit Imaging. 2016;29(4):496-506. doi:10.1007/s10278-016-9873-1
Kothari S, Phan JH, Osunkoya AO, Wang MD. Biological interpretation of morphological patterns in histopathological whole-slide images. ACM BCB. 2012;2012:218-225. doi:10.1145/2382936.2382964
Hart SN, Flotte W, Norgan AP, et al. Classification of melanocytic lesions in selected and whole-slide images via convolutional neural networks. J Pathol Inform. 2019;20(10):5. doi:10.4103/jpi.jpi_32_18
Munir K, Elahi H, Ayub A, Frezza F, Rizzi A. Cancer diagnosis using deep learning: a bibliographic review. Cancers. 2019 Aug 23;11(9):1235. doi:10.3390/cancers11091235
Gómez-Hernández EJ, García JM. Parallel Computing: Technology Trends. Vol 36. IOS Press; 2020:35. doi:10.3233/APC200022
Schömig-Markiefka B, Pryalukhin A, Hulla W, et al. Quality control stress test for deep learning-based diagnostic model in digital pathology. Mod Pathol. 2021;34(12):2098-2108. doi:10.1038/s41379-021-00859-x
Taqi SA, Sami SA, Sami LB, Zaki SA. A review of artifacts in histopathology. J Oral Maxillofac Pathol. 2018;22(2):279. doi:10.4103/jomfp.JOMFP_125_15
Lai Z, Deng H. Medical image classification based on deep features extracted by deep model and statistic feature fusion with multilayer perceptron. Comput Intell Neurosci. 2018;12(2018):2061516. doi:10.1155/2018/2061516
Mishra R, Daescu O, Leavey P, Rakheja D, Sengupta A. Convolutional neural network for histopathological analysis of osteosarcoma. J Comput Biol. 2018;25(3):313-325. doi:10.1089/cmb.2017.0153
Nirschl JJ, Janowczyk A, Peyster EG, et al. Deep learning tissue segmentation in cardiac histopathology images. Deep Learning for Medical Image Analysis. Elsevier; 2017:179-195.
Wei Q, Dunbrack RL Jr. The role of balanced training and testing data sets for binary classifiers in bioinformatics. PLoS One. 2013;8(7):e67863. doi:10.1371/journal.pone.0067863
Xu H, Lu C, Berendt R, Jha N, Mandal M. Automated analysis and classification of melanocytic tumor on skin whole slide images. Comput Med Imaging Graph. 2018;66:124-134. doi:10.1016/j.compmedimag.2018.01.008
Tellez D, Litjens G, Bándi P, et al. Quantifying the effects of data augmentation and stain color normalization in convolutional neural networks for computational pathology. Med Image Anal. 2019;58:101544. doi:10.1016/j.media.2019.101544
Mikołajczyk A, Grochowski M. Data augmentation for improving deep learning in image classification problem. Paper presented at the 2018 International Interdisciplinary PhD Workshop (IIPhDW). 2018:117-122. doi: 10.1109/IIPHDW.2018.8388338
Faryna K, van der Laak J, Litjens G. Tailoring automated data augmentation to H&E-stained histopathology. Paper presented at Medical Imaging with Deep Learning. 2021. 143:168-178.

Auteurs

Anna Luíza Damaceno Araújo (ALD)

Oral Diagnosis Department, Piracicaba Dental School, University of Campinas (FOP-UNICAMP), Piracicaba, São Paulo, Brazil.
Head and Neck Surgery Department and LIM 28, University of São Paulo Medical School, São Paulo, São Paulo, Brazil.

Viviane Mariano da Silva (VM)

Institute of Science and Technology, Federal University of São Paulo (ICT-Unifesp), São José dos Campos, São Paulo, Brazil.

Maíra Suzuka Kudo (MS)

Institute of Science and Technology, Federal University of São Paulo (ICT-Unifesp), São José dos Campos, São Paulo, Brazil.

Eduardo Santos Carlos de Souza (ESC)

Institute of Mathematics and Computer Sciences of University of São Paulo (ICMC-USP), São Carlos, São Paulo, Brazil.

Cristina Saldivia-Siracusa (C)

Oral Diagnosis Department, Piracicaba Dental School, University of Campinas (FOP-UNICAMP), Piracicaba, São Paulo, Brazil.

Daniela Giraldo-Roldán (D)

Oral Diagnosis Department, Piracicaba Dental School, University of Campinas (FOP-UNICAMP), Piracicaba, São Paulo, Brazil.

Marcio Ajudarte Lopes (MA)

Oral Diagnosis Department, Piracicaba Dental School, University of Campinas (FOP-UNICAMP), Piracicaba, São Paulo, Brazil.

Pablo Agustin Vargas (PA)

Oral Diagnosis Department, Piracicaba Dental School, University of Campinas (FOP-UNICAMP), Piracicaba, São Paulo, Brazil.

Syed Ali Khurram (SA)

Unit of Oral and Maxillofacial Pathology, School of Clinical Dentistry, University of Sheffield, Sheffield, UK.

Alexander T Pearson (AT)

Section of Hemathology/Oncology, Department of Medicine, University of Chicago, Chicago, Illinois, USA.
University of Chicago Comprehensive Cancer Center, Chicago, Illinois, USA.

Luiz Paulo Kowalski (LP)

Head and Neck Surgery Department and LIM 28, University of São Paulo Medical School, São Paulo, São Paulo, Brazil.
Department of Head and Neck Surgery and Otorhinolaryngology, A.C. Camargo Cancer Center, São Paulo, São Paulo, Brazil.

André Carlos Ponce de Leon Ferreira de Carvalho (ACPLF)

Institute of Mathematics and Computer Sciences of University of São Paulo (ICMC-USP), São Carlos, São Paulo, Brazil.

Alan Roger Santos-Silva (AR)

Oral Diagnosis Department, Piracicaba Dental School, University of Campinas (FOP-UNICAMP), Piracicaba, São Paulo, Brazil.

Matheus Cardoso Moraes (MC)

Institute of Science and Technology, Federal University of São Paulo (ICT-Unifesp), São José dos Campos, São Paulo, Brazil.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH