Single cell evaluation of endocardial Hand2 gene regulatory networks reveals HAND2-dependent pathways that impact cardiac morphogenesis.


Journal

Development (Cambridge, England)
ISSN: 1477-9129
Titre abrégé: Development
Pays: England
ID NLM: 8701744

Informations de publication

Date de publication:
15 02 2023
Historique:
received: 30 09 2022
accepted: 26 12 2022
pmc-release: 06 02 2024
pubmed: 10 1 2023
medline: 9 2 2023
entrez: 9 1 2023
Statut: ppublish

Résumé

The transcription factor HAND2 plays essential roles during cardiogenesis. Hand2 endocardial deletion (H2CKO) results in tricuspid atresia or double inlet left ventricle with accompanying intraventricular septum defects, hypo-trabeculated ventricles and an increased density of coronary lumens. To understand the regulatory mechanisms of these phenotypes, single cell transcriptome analysis of mouse E11.5 H2CKO hearts was performed revealing a number of disrupted endocardial regulatory pathways. Using HAND2 DNA occupancy data, we identify several HAND2-dependent enhancers, including two endothelial enhancers for the shear-stress master regulator KLF2. A 1.8 kb enhancer located 50 kb upstream of the Klf2 TSS imparts specific endothelial/endocardial expression within the vasculature and endocardium. This enhancer is HAND2-dependent for ventricular endocardium expression but HAND2-independent for Klf2 vascular and valve expression. Deletion of this Klf2 enhancer results in reduced Klf2 expression within ventricular endocardium. These data reveal that HAND2 functions within endocardial gene regulatory networks including shear-stress response.

Identifiants

pubmed: 36620995
pii: 286290
doi: 10.1242/dev.201341
pmc: PMC10110492
pii:
doi:

Substances chimiques

Transcription Factors 0
Hand2 protein, mouse 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : NHLBI NIH HHS
ID : P01 HL134599
Pays : United States
Organisme : NIDCR NIH HHS
ID : R01 DE029091
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL145060
Pays : United States
Organisme : NIH HHS
ID : 1R01DE02909
Pays : United States

Informations de copyright

© 2023. Published by The Company of Biologists Ltd.

Déclaration de conflit d'intérêts

Competing interests The authors declare no competing or financial interests.

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Auteurs

Rajani M George (RM)

Herman B Wells Center for Pediatric Research, Departments of Pediatrics, Anatomy and Medical and Molecular Genetics, Indiana Medical School, Indianapolis, IN 46202, USA.

Beth A Firulli (BA)

Herman B Wells Center for Pediatric Research, Departments of Pediatrics, Anatomy and Medical and Molecular Genetics, Indiana Medical School, Indianapolis, IN 46202, USA.

Ram Podicheti (R)

Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405, USA.

Douglas B Rusch (DB)

Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405, USA.

Brandon J Mannion (BJ)

Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Comparative Biochemistry Program, University of California, Berkeley, CA 94720, USA.

Len A Pennacchio (LA)

Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Comparative Biochemistry Program, University of California, Berkeley, CA 94720, USA.
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Marco Osterwalder (M)

Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Department for BioMedical Research (DBMR), University of Bern, Bern 3008, Switzerland.
Department of Cardiology, Bern University Hospital, Bern 3010, Switzerland.

Anthony B Firulli (AB)

Herman B Wells Center for Pediatric Research, Departments of Pediatrics, Anatomy and Medical and Molecular Genetics, Indiana Medical School, Indianapolis, IN 46202, USA.

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