Automated grading of chest x-ray images for viral pneumonia with convolutional neural networks ensemble and region of interest localization.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2023
Historique:
received: 10 08 2022
accepted: 27 12 2022
entrez: 17 1 2023
pubmed: 18 1 2023
medline: 20 1 2023
Statut: epublish

Résumé

Following its initial identification on December 31, 2019, COVID-19 quickly spread around the world as a pandemic claiming more than six million lives. An early diagnosis with appropriate intervention can help prevent deaths and serious illness as the distinguishing symptoms that set COVID-19 apart from pneumonia and influenza frequently don't show up until after the patient has already suffered significant damage. A chest X-ray (CXR), one of many imaging modalities that are useful for detection and one of the most used, offers a non-invasive method of detection. The CXR image analysis can also reveal additional disorders, such as pneumonia, which show up as anomalies in the lungs. Thus these CXRs can be used for automated grading aiding the doctors in making a better diagnosis. In order to classify a CXR image into the Negative for Pneumonia, Typical, Indeterminate, and Atypical, we used the publicly available CXR image competition dataset SIIM-FISABIO-RSNA COVID-19 from Kaggle. The suggested architecture employed an ensemble of EfficientNetv2-L for classification, which was trained via transfer learning from the initialised weights of ImageNet21K on various subsets of data (Code for the proposed methodology is available at: https://github.com/asadkhan1221/siim-covid19.git). To identify and localise opacities, an ensemble of YOLO was combined using Weighted Boxes Fusion (WBF). Significant generalisability gains were made possible by the suggested technique's addition of classification auxiliary heads to the CNN backbone. The suggested method improved further by utilising test time augmentation for both classifiers and localizers. The results for Mean Average Precision score show that the proposed deep learning model achieves 0.617 and 0.609 on public and private sets respectively and these are comparable to other techniques for the Kaggle dataset.

Identifiants

pubmed: 36649367
doi: 10.1371/journal.pone.0280352
pii: PONE-D-22-22434
pmc: PMC9844910
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0280352

Informations de copyright

Copyright: © 2023 Khan et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

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Auteurs

Asad Khan (A)

Computer and Software Engineering Department, National University of Sciences and Technology, Islamabad, Pakistan.

Muhammad Usman Akram (MU)

Computer and Software Engineering Department, National University of Sciences and Technology, Islamabad, Pakistan.

Sajid Nazir (S)

Department of Computing, Glasgow Caledonian University, Glasgow, United Kingdom.

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